Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.299398	Hspd1	heat shock protein 1 (chaperonin)	1		15510
Gene Ontology	ATP binding | chaperone activity | mitochondrion | protein folding | response to heat | response to unfolded protein
Human Homolog	HSPD1[heat shock 60kDa protein 1 (chaperonin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 218 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAATGTTG (2) AGAGTTCAGA CCTACAGATA GACAATGAAA GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TGGTGACACA 58.8 0.0588 Cb medulloblastoma AGAGTTCAGA CCACCCATTG CCTACAGATA GACAATGAAA GACAATGACA GGGGAAAAAA (4) GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGCACACG (3) TCCCTGCTCT (3) TGACTTCTCT (3) TGGTGAAAAA (2) TGGTGACACA 66.8 0.0668 P8 GC+1d culture AAAAATGTTG (2) AGAGTTCAGA CCTACAGATA GACAATGAAA GACAATGACA GAGAGGAGGA (3) GGGGAAAAAA (4) GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TTTTAACTCC 53.5 0.0535 P8 GC+SHH+1d culture AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCAAAGATGT (3) CCACCCATTG CCTACAGATA GACAATGAAA GGGGGGGGGG GTCTGCTTGT (3) GTGGCACACG (3) TGGTGAAAAA (2) TGGTGACACA TTTTAACTCC 74 0.074 3T3 fibroblasts AGAGTTCAGA GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGCACACG (3) TCCCTGCTCT (3) 63 0.063 E15 cortex GAGAGGAGGA (3) GGGGAAAAAA (4) GGGGGGGGGG GTGGCACACG (3) TGGTGAAAAA (2) 88.9 0.0889 P1 cortex AAAAATGTTG (2) GGGGGAGGGG (4) GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) 27.1 0.0271 Hypothalamus AAAAATGTTG (2) AGAGTTCAGA CCTACAGATA GACAATGAAA GAGAGTTCCA GGGGGGGGGG GTCTGCTTGT (3) GTGGAAAAAA TGGTGAAAAA (2) TTTTAACTCC 37.9 0.0379 E12.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCTACAGATA GACAATGAAA GACAATGACA GGGGAAAAAA (4) GGGGGAGGGG (4) GTCTGCTTGT (3) GTGGCACACG (3) TGGTGAAAAA (2) TGGTGACACA 118.4 0.1184 E14.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCTACAGATA GACAATGAAA GACAATGACA GAGAGGAGGA (3) GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TGGTGAAGGG TGGTGACACA 83.6 0.0836 E16.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCTACAGATA GACAATGAAA GACAATGACA GGGGAAAAAA (4) GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TCCCTGCTCT (3) TGGTGAAAAA (2) TGGTGAAGGG TGGTGACACA TTTTAACTCC 65 0.065 E18.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCAAAGATGT (3) CCTACAGATA GACAATGACA GGGGAAAAAA (4) GGGGGAGGGG (4) GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGACTTCTCT (3) TGGTGAAAAA (2) TGGTGACACA 85.3 0.0853 P0.5 retina AAAAATGTTG (2) AGAGTTCAGA AGCTTGAACA CCTACAGATA GACAATGAAA GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAGGG TTTTAACTCC 43.5 0.0435 P2.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCTACAGATA GACAATGAAA GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGCACACG (3) TCCCTGCTCT (3) TGACTTCTCT (3) TGGTGACACA 65.3 0.0653 P4.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA GACAATGAAA GGGGGGGGGG GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TTTTAACTCC 65.4 0.0654 P6.5 retina AAAAATGTTG (2) AGAGTTCAAA AGAGTTCAGA CCTACAGATA GACAATGAAA GGGGAAAAAA (4) GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TTTTAACTCC 70.1 0.0701 P10.5 crx- retina AGAGTTCAAA AGAGTTCAGA AGCTTGAACA CCTACAGATA GACAATGAAA GGGGGAGGGG (4) GTCTGCTTGT (3) GTGGCACACG (3) TGGTGAAAAA (2) TTTTAACTCC 50.3 0.0503 P10.5 crx+ retina AGAGTTCAAA AGAGTTCAGA CCTACAGATA GACAATGAAA GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TGGTGACACA TTTTAACTCC 78.8 0.0788 Adult retinal AGAGTTCAAA AGAGTTCAGA AGCTTGAACA CCTACAGATA GACAATGAAA GGGGGAGGGG (4) GGGGGGGGGG GTCTGCTTGT (3) GTGGAAAAAA GTGGCACACG (3) TGGTGAAAAA (2) TTTTAACTCC 55.9 0.0559 ONL AGAGTTCAGA CCTACAGATA GACAATGAAA GAGAGTTCCA GGGGGGGGGG GTCTGCTTGT (3) GTGGCACACG (3) TGGTGAAAAA (2) TTTTAACTCC 30.5 0.0305