Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30041	Copa	coatomer protein complex subunit alpha	1	1 93.5 cM	12847
Gene Ontology	COPI vesicle coat | cytoplasm | extracellular space | microsome | pancreatic juice secretion | soluble fraction | structural molecule activity | viral capsid
Human Homolog	COPA[coatomer protein complex, subunit alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGAACTAGC (2) CACAACCCCT GTGAGGAACG 8.1 0.0081 Cb medulloblastoma AAGAACTAGC (2) GAATGTGATA 4.6 0.0046 P8 GC+1d culture AAGAACTAGC (2) GAATGTGATA TCCTCTCTCT TCCTTTTTCT (3) TCTTTTTTTT 19.3 0.0193 P8 GC+SHH+1d culture AAGAACTAGC (2) TCCTCTCTCT TCCTTTTTCT (3) TGGAGAGTCT TGTCTGGCTG 15.3 0.0153 3T3 fibroblasts TCCTCTCTCT 10.5 0.0105 E15 cortex TCCTCTCTCT 9.9 0.0099 P1 cortex AAGAACTAGC (2) TCCTCTCTCT 9 0.009 Hypothalamus AAGAACTAGC (2) TCCTTTTTCT (3) 3.6 0.0036 E12.5 retina AAGAACTAGC (2) CACAACCCCT GTGAGGAACG TGGAGAGTCT 7.6 0.0076 E14.5 retina TCCTTTTTCT (3) TGGAGAGTCT TTCTCTCTCT (2) 7.2 0.0072 E16.5 retina CACAACCCCT GAATGTGATA TCCTCTCTCT TGGAGAGTCT 10.8 0.0108 E18.5 retina AAGAACTAGC (2) GAATGTGATA TCCTTTTTCT (3) 14.5 0.0145 P0.5 retina AAGAACTAGC (2) GAACAATGAA TCCTCTCTCT 13.8 0.0138 P2.5 retina AAGAACTAGC (2) GAACAATGAA TCCTCTCTCT TCCTTTTTCT (3) TGGAGAGTCT 15.9 0.0159 P4.5 retina AAGAACTAGC (2) GAATGTGATA TCCTCTCTCT TCCTTTTTCT (3) 15.9 0.0159 P6.5 retina AAGAACTAGC (2) GAATGTGATA GTGAGGAACG TCCTCTCTCT TGGAGAGTCT TGTCTGGCTG 20 0.02 P10.5 crx- retina AAGAACTAGC (2) TCCTTTTTCT (3) TCTTTTTTTT 9.3 0.0093 P10.5 crx+ retina AAGAACTAGC (2) GAATGTGATA GTGAGGAACG TCCTTTTTCT (3) 9.5 0.0095 Adult retinal GAATGTGATA TCCTCTCTCT TTCTCTCTCT (2) 20.5 0.0205 ONL GAATGTGATA TCCTCTCTCT TCTTTTTTTT TTCTCTCTCT (2) 15.2 0.0152