Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.301646	D130056L21Rik	RIKEN cDNA D130056L21 gene	2		320123
Mm.301646	9130404D14Rik	RIKEN cDNA 9130404D14 gene	2		227737
Human Homolog	C9orf88[chromosome 9 open reading frame 88]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 87 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) TTCTCTAGTG (3) 16.4 0.0164 Cb medulloblastoma AGGAAATGAG (2) AGGACAGTGC (2) GAAGACAGAA GTTCTGCACA (4) 25.4 0.0254 P8 GC+1d culture AATCTGAACG (2) AGGAAATGAG (2) ATGACAGAAG (2) GTTCTGCACA (4) TTCTCTAGTG (3) 24.1 0.0241 P8 GC+SHH+1d culture AATCTGAACG (2) AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) TTCTCTAGTG (3) 16.4 0.0164 3T3 fibroblasts AATCTGAACG (2) 10.5 0.0105 E15 cortex AGGAAATGAG (2) ATGACAGAAG (2) GGCCAGGAAA (2) TGGGAGGGCC 29.5 0.0295 P1 cortex AATCTGAACG (2) AGGAAATGAG (2) ATGACAGAAG (2) 13.5 0.0135 Hypothalamus AATCTGAACG (2) AGGACAGTGC (2) GAAGACAGAA 12.7 0.0127 E12.5 retina AGGAAATGAG (2) AGGACAGTGC (2) GGCCAGGAAA (2) 9.4 0.0094 E14.5 retina AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) GGCCAGGAAA (2) TGGGAGGGCC TTCTCTAGTG (3) 20 0.02 E16.5 retina AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) GGCCAGGAAA (2) 18.1 0.0181 E18.5 retina AGGAAATGAG (2) AGGACAGTGC (2) GGCCAGGAAA (2) TTCTCTAGTG (3) 10.8 0.0108 P0.5 retina AAAGCAGTGG (2) AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) 8 0.008 P2.5 retina AGGAAATGAG (2) ATGACAGAAG (2) GAAGACAGAA TTCTCTAGTG (3) 8.9 0.0089 P4.5 retina AGGAAATGAG (2) AGGACAGTGC (2) GAAGACAGAA GTTCTGCACA (4) 12 0.012 P6.5 retina AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) GAAGACAGAA GCTGGGGTTG TGGGAGGGCC TTCTCTAGTG (3) 28.4 0.0284 P10.5 crx- retina AAAGCAGTGG (2) AATCTGAACG (2) AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) GTTCTGCACA (4) TTCTCTAGTG (3) 26.1 0.0261 P10.5 crx+ retina AATCTGAACG (2) AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) GCTGGGGTTG GTTCTGCACA (4) TTCTCTAGTG (3) 21 0.021 Adult retinal AGGAAATGAG (2) AGGACAGTGC (2) TTCTCTAGTG (3) 7.5 0.0075 ONL AGGAAATGAG (2) AGGACAGTGC (2) ATGACAGAAG (2) GAAGACAGAA GCTGGGGTTG 15.2 0.0152