| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACATTTTTAA (3) CCTGCAGCTG (4)
| 6.5 | 0.0065 |
| Cb medulloblastoma | ACATTTTTAA (3) CCTGCAGCTG (4) GGAAGGGGAT TGCATCAAGG
| 13.8 | 0.0138 |
| P8 GC+1d culture | ACATTTTTAA (3) CCTGCAGCTG (4) GCATCTTCTG GGAAGGGGAT TAACCTCCCA
| 12.5 | 0.0125 |
| P8 GC+SHH+1d culture | ACATTTTTAA (3) CCTGCAGCTG (4) GCATCTTCTG GGAAGGGGAT TAACCTCCCA
| 11.7 | 0.0117 |
| 3T3 fibroblasts | CCTGCAGCTG (4)
| 3.5 | 0.0035 |
| E15 cortex | GCATCTTCTG TGCATCAAGG
| 9.8 | 0.0098 |
| Hypothalamus | ACATTTTTAA (3) CCTGCAGCTG (4) GCATCTTCTG GGAAGGGGAT
| 7.2 | 0.0072 |
| E12.5 retina | ACATTTTTAA (3) CCTGCAGCTG (4) GCATCTTCTG
| 7.6 | 0.0076 |
| E14.5 retina | ACATTTTTAA (3) GCATCTTCTG TAACCTCCCA
| 10.9 | 0.0109 |
| E16.5 retina | ACATTTTTAA (3) GCATCTTCTG
| 21.7 | 0.0217 |
| E18.5 retina | ACATTTTTAA (3) CCTGCAGCTG (4) GGAAGGGGAT
| 5.4 | 0.0054 |
| P0.5 retina | CCTGCAGCTG (4)
| 3.9 | 0.0039 |
| P2.5 retina | CCTGCAGCTG (4) TAACCTCCCA
| 3.6 | 0.0036 |
| P4.5 retina | CCTGCAGCTG (4)
| 9.9 | 0.0099 |
| P6.5 retina | CCTGCAGCTG (4)
| 5 | 0.005 |
| P10.5 crx- retina | CCTGCAGCTG (4) GCATCTTCTG TAACCTCCCA
| 13 | 0.013 |
| P10.5 crx+ retina | ACATTTTTAA (3) CCTGCAGCTG (4) TGCATCAAGG
| 9.6 | 0.0096 |
| Adult retinal | TAACCTCCCA
| 1.9 | 0.0019 |
| ONL | ACATTTTTAA (3) CCTGCAGCTG (4) GCATCTTCTG
| 7.6 | 0.0076 |