| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) GCTTCCCTTT
| 207.2 | 0.2072 |
| Cb medulloblastoma | AAAAAAAAAA (2) CATTTGTCAG (4) GCTTCCCTTT GGGCTGGCTC
| 804.7 | 0.8047 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAGGGGAAAG (4) AGGCAGGCAG (2) GCTTCCCTTT GGGCTGGCTC
| 222.6 | 0.2226 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAGGGGAAAG (4) AGAACATTCT AGGCAGGCAG (2) GGGCTGGCTC
| 291.6 | 0.2916 |
| 3T3 fibroblasts | AAAAAAAAAA (2) AAGGGGAAAG (4) GGGCTGGCTC
| 52.5 | 0.0525 |
| E15 cortex | AAAAAAAAAA (2) AAGGGGAAAG (4) GGGCTGGCTC
| 232.5 | 0.2325 |
| P1 cortex | AAAAAAAAAA (2) AAGGGGAAAG (4)
| 254.5 | 0.2545 |
| Hypothalamus | AAAAAAAAAA (2) GGGCTGGCTC
| 125 | 0.125 |
| E12.5 retina | AAAAAAAAAA (2) AAGGGGAAAG (4) GCTTCCCTTT
| 146.4 | 0.1464 |
| E14.5 retina | AAAAAAAAAA (2) AAGGGGAAAG (4) GGGCTGGCTC
| 98.3 | 0.0983 |
| E16.5 retina | AAAAAAAAAA (2) AGGCAGGCAG (2) CAGGCCCAGA
| 47.1 | 0.0471 |
| E18.5 retina | AAAAAAAAAA (2) AAGGGGAAAG (4) GCTTCCCTTT
| 380.1 | 0.3801 |
| P0.5 retina | AAAAAAAAAA (2) AAGGGGAAAG (4) AGAACATTCT CAGGCCCAGA GCTTCCCTTT GGGCTGGCTC
| 137.6 | 0.1376 |
| P2.5 retina | AAAAAAAAAA (2) AGGCAGGCAG (2) GCTTCCCTTT
| 332.7 | 0.3327 |
| P4.5 retina | AAAAAAAAAA (2) AAGGGGAAAG (4) CAGGCCCAGA GCTTCCCTTT GGGCTGGCTC
| 295.3 | 0.2953 |
| P6.5 retina | AAAAAAAAAA (2) AAGGGGAAAG (4) GCTTCCCTTT GGGCTGGCTC
| 276.8 | 0.2768 |
| P10.5 crx- retina | AAAAAAAAAA (2) AGAACATTCT GCTTCCCTTT GGGCTGGCTC
| 50.3 | 0.0503 |
| P10.5 crx+ retina | AAAAAAAAAA (2) CAGGCCCAGA CATTTGTCAG (4) GCTTCCCTTT GGGCTGGCTC
| 107.5 | 0.1075 |
| Adult retinal | AAAAAAAAAA (2) AAGGGGAAAG (4) GCTTCCCTTT GGGCTGGCTC
| 70.5 | 0.0705 |
| ONL | AAAAAAAAAA (2) AAGGGGAAAG (4) GCTTCCCTTT
| 112.9 | 0.1129 |