| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACAGTTCCAG (2) TAATAAAAAT
| 35.9 | 0.0359 |
| Cb medulloblastoma | TAATAAAAAT
| 9.2 | 0.0092 |
| P8 GC+1d culture | ATGCCCTTTT (2) GTTATCCAGC (2) TAATAAAAAT TTCACAGATC
| 37.6 | 0.0376 |
| P8 GC+SHH+1d culture | ACAGTTCCAG (2) ATGCCCTTTT (2) GTTATCCAGC (2) TAATAAAAAT
| 66.8 | 0.0668 |
| 3T3 fibroblasts | ACAGTTCCAG (2)
| 3.5 | 0.0035 |
| E15 cortex | ACAGTTCCAG (2) TAATAAAAAT
| 14.8 | 0.0148 |
| P1 cortex | CAAGCAATTC (2) TAATAAAAAT
| 9 | 0.009 |
| Hypothalamus | ACAGTTCCAG (2) ATGCCATCTT (2) ATTAAAAATG (2) TAATAAAAAT
| 12.6 | 0.0126 |
| E12.5 retina | CAAGCAATTC (2) GAAATGTGCC (4) TAATAAAAAT TTCACAGATC
| 26.4 | 0.0264 |
| E14.5 retina | ACAGTTCCAG (2) ATTAAAAATG (2) CAAGCAATTC (2) TAATAAAAAT
| 80.1 | 0.0801 |
| E16.5 retina | ACAGTTCCAG (2) TAATAAAAAT
| 52.5 | 0.0525 |
| E18.5 retina | ACAGTTCCAG (2) GTTATCCAGC (2) TAATAAAAAT
| 74.5 | 0.0745 |
| P0.5 retina | ACAGTTCCAG (2) CAAGCAATTC (2) TAATAAAAAT TTCACAGATC
| 21.7 | 0.0217 |
| P2.5 retina | ACAGTTCCAG (2) ATGCCCTTTT (2) TAATAAAAAT
| 52.9 | 0.0529 |
| P4.5 retina | GAAATGTGCC (4) GTTATCCAGC (2) TAATAAAAAT
| 31.8 | 0.0318 |
| P6.5 retina | CAAGCAATTC (2) GAAATGTGCC (4) GTTATCCAGC (2) TAATAAAAAT TTCACAGATC
| 50.1 | 0.0501 |
| P10.5 crx- retina | ACAGTTCCAG (2) ATGCCATCTT (2) CAAGCAATTC (2) GAAATGTGCC (4) TAATAAAAAT TTCACAGATC
| 15.1 | 0.0151 |
| P10.5 crx+ retina | ACAGTTCCAG (2) ATGCCATCTT (2) GAAATGTGCC (4) TAATAAAAAT
| 36.4 | 0.0364 |
| Adult retinal | TAATAAAAAT
| 14.8 | 0.0148 |
| ONL | ATTAAAAATG (2) CAAGCAATTC (2) GAAATGTGCC (4) TAATAAAAAT
| 65.1 | 0.0651 |