| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GCTGCCCCCT (3) TGTTTTAGAA (2) TTGGTGAAGG
| 477.9 | 0.4779 |
| Cb medulloblastoma | GCTGCCCCCT (3) TTGGTGAAGG
| 41.6 | 0.0416 |
| P8 GC+1d culture | AAGAAAACAG (3) ATTTAACTCC (3) GCTGCCCCCT (3) TGAAGTAGGA (2) TGTTTTAGAA (2) TTGGTGAAGG
| 617.4 | 0.6174 |
| P8 GC+SHH+1d culture | GCTGCCCCCT (3) TGAAGTAGGA (2) TTGGTGAAGG
| 340.7 | 0.3407 |
| 3T3 fibroblasts | GCTGCCCCCT (3) TTGGTGAAGG
| 52.6 | 0.0526 |
| E15 cortex | ATTTAACTCC (3) TTGGTGAAGG
| 153.3 | 0.1533 |
| P1 cortex | TTGGTGAAGG
| 222.7 | 0.2227 |
| Hypothalamus | GCTGCCCCCT (3) TTGGTGAAGG
| 101.4 | 0.1014 |
| E12.5 retina | TTGGTGAAGG
| 142.7 | 0.1427 |
| E14.5 retina | ATTTAACTCC (3) GCTGCCCCCT (3) TTGGTGAAGG
| 38.2 | 0.0382 |
| E16.5 retina | GCTGCCCCCT (3) TGAAGTAGGA (2) TTGGTGAAGG
| 43.5 | 0.0435 |
| E18.5 retina | TGAAGTAGGA (2) TTGGTGAAGG
| 81.9 | 0.0819 |
| P0.5 retina | ATTTAACTCC (3) GCTGCCCCCT (3) TTGGTGAAGG
| 106.1 | 0.1061 |
| P2.5 retina | TTGGTGAAGG
| 80.9 | 0.0809 |
| P4.5 retina | TGAAGTAGGA (2) TGTTTTAGAA (2) TTGGTGAAGG
| 93.2 | 0.0932 |
| P6.5 retina | AAGAAAACAG (3) GCTGCCCCCT (3) TGTTTTAGAA (2) TTGGTGAAGG
| 101.7 | 0.1017 |
| P10.5 crx- retina | ATTTAACTCC (3) GCTGCCCCCT (3) TGAAGTAGGA (2) TGTTTTAGAA (2) TTGGTGAAGG
| 72.6 | 0.0726 |
| P10.5 crx+ retina | GCTGCCCCCT (3) TTGGTGAAGG
| 96.1 | 0.0961 |
| Adult retinal | AAGAAAACAG (3) GCTGCCCCCT (3) TGAAGTAGGA (2) TTGGTGAAGG
| 27.9 | 0.0279 |
| ONL | TTGGTGAAGG
| 17.2 | 0.0172 |