| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CAGCGTTGCA GCCTGCCCTG (2) GTGATGCAAG TGCAAAAAAA (2)
| 31 | 0.031 |
| Cb medulloblastoma | GCCTGCCCTG (2) GTGATGCAAG GTGGCTAACT TGCAAAAAAA (2)
| 48.5 | 0.0485 |
| P8 GC+1d culture | GCCTGCCCCG (4) GCCTGCCCTG (2) GGGGGTTCTC GTGATGCAAG TGCAAAAAAA (2)
| 59.3 | 0.0593 |
| P8 GC+SHH+1d culture | GCCTGCCCTG (2) GGGGGTTCTC GTGATGCAAG TCCCTAGCTC TGCAAAAAAA (2)
| 46.9 | 0.0469 |
| 3T3 fibroblasts | GAGGGCTTCC (2) GCCTGCCCTG (2)
| 14 | 0.014 |
| E15 cortex | GCCTGCCCCG (4) GTGATGCAAG
| 29.6 | 0.0296 |
| P1 cortex | GCCTGCCCTG (2) GGGGGTTCTC GTGATGCAAG
| 27.2 | 0.0272 |
| Hypothalamus | GCCTGCCCTG (2) GTGATGCAAG GTGGCTAACT TGCAAAAAAA (2)
| 77.9 | 0.0779 |
| E12.5 retina | CAGCGTTGCA GAGGGCTTCC (2) GCCTGCCCTG (2) GTGATGCAAG TGCAAAAAAA (2)
| 13.2 | 0.0132 |
| E14.5 retina | GCCTGCCCTG (2) GTGATGCAAG TGCAAAAAAA (2) TGTTCAAGGC
| 36.4 | 0.0364 |
| E16.5 retina | CAGCGTTGCA GCCTGCCCCG (4) GCCTGCCCTG (2) GTGATGCAAG TGCAAAAAAA (2)
| 29 | 0.029 |
| E18.5 retina | GCCTGCCCCG (4) GCCTGCCCTG (2) GCCTGCCCTT GTGATGCAAG TGCAAAAAAA (2)
| 63.6 | 0.0636 |
| P0.5 retina | GAGCAGTTTC (2) GCCTGCCCCG (4) GCCTGCCCTG (2) GTGATGCAAG TCCCTAGCTC TGCAAAAAAA (2) TGTTCAAGGC
| 43.4 | 0.0434 |
| P2.5 retina | GCCTGCCCCG (4) GCCTGCCCTG (2) GCCTGCCCTT GTGATGCAAG TGCAAAAAAA (2)
| 31.8 | 0.0318 |
| P4.5 retina | GCCTGCCCCG (4) GCCTGCCCTG (2) GTGATGCAAG TGCAAAAAAA (2) TGTTCAAGGC
| 53.6 | 0.0536 |
| P6.5 retina | GCCTGCCCCG (4) GCCTGCCCTG (2) GGGGGTTCTC GTGATGCAAG TGCAAAAAAA (2) TGTTCAAGGC
| 80.1 | 0.0801 |
| P10.5 crx- retina | CAGCGTTGCA GCCTGCCCTG (2) GGGGGTTCTC GTGATGCAAG GTGGCTAACT
| 94.8 | 0.0948 |
| P10.5 crx+ retina | GCCTGCCCTG (2) GTGATGCAAG TGCAAAAAAA (2) TGTTCAAGGC
| 165.3 | 0.1653 |
| Adult retinal | GCCTGCCCCG (4) GCCTGCCCTG (2) GCCTGCCCTT GGGGGTTCTC GTGATGCAAG TCCCTAGCTC TGCAAAAAAA (2) TGTTCAAGGC
| 92.9 | 0.0929 |
| ONL | GCCTGCCCCG (4) GCCTGCCCTG (2) GTGATGCAAG GTGGCTAACT TGCAAAAAAA (2)
| 84.3 | 0.0843 |