| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 GC+1d culture | GGTAAGTTTT (2) TTTGTTTTTT (2)
| 4.5 | 0.0045 |
| P8 GC+SHH+1d culture | CAAATAGTTT CCAAAAAAAC (2) GGTAAGTTTT (2)
| 5.9 | 0.0059 |
| E15 cortex | GGTAAGTTTT (2)
| 4.9 | 0.0049 |
| P1 cortex | GGTAAGTTTT (2)
| 9.1 | 0.0091 |
| Hypothalamus | GGTAAGTTTT (2)
| 1.8 | 0.0018 |
| E12.5 retina | CCAAAAAAAC (2)
| 1.9 | 0.0019 |
| E14.5 retina | CAAAGAAACA (2) GGTAAGTTTT (2) TTTGTTTTTT (2)
| 9.1 | 0.0091 |
| E16.5 retina | CAAAGAAACA (2)
| 3.6 | 0.0036 |
| E18.5 retina | CAAAGAAACA (2) CAAATAGTTT GGTAAGTTTT (2) TTTGTTTTTT (2)
| 18.1 | 0.0181 |
| P0.5 retina | AACACGTGTG GGTAAGTTTT (2) TTTGTTTTTT (2)
| 6 | 0.006 |
| P2.5 retina | CAAAGAAACA (2) GGTAAGTTTT (2) TTCAGGCTTT
| 5.4 | 0.0054 |
| P4.5 retina | AACACGTGTG GGTAAGTTTT (2) TTTGTTTTTT (2)
| 10 | 0.01 |
| P6.5 retina | AACACGTGTG CAAAGAAACA (2)
| 3.4 | 0.0034 |
| P10.5 crx- retina | AACACGTGTG GGTAAGTTTT (2) TTCAGGCTTT TTTGTTTTTT (2)
| 11.2 | 0.0112 |
| P10.5 crx+ retina | CAAATAGTTT CCAAAAAAAC (2)
| 3.8 | 0.0038 |
| Adult retinal | GGTAAGTTTT (2) TTCAGGCTTT TTTGTTTTTT (2)
| 13 | 0.013 |
| ONL | TTTGTTTTTT (2)
| 1.9 | 0.0019 |