| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TGTGTAGTGT
| 1.6 | 0.0016 |
| Cb medulloblastoma | GAGAAGCCTG (2) TGTGTAGTGT
| 13.8 | 0.0138 |
| P8 GC+1d culture | CTGTCTTGAG GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 12.6 | 0.0126 |
| P8 GC+SHH+1d culture | CTGTCTTGAG GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 12.8 | 0.0128 |
| 3T3 fibroblasts | GAGAAGCCTG (2) TCTTTAATCC (2)
| 14 | 0.014 |
| E15 cortex | TCTTTAATCC (2)
| 4.9 | 0.0049 |
| P1 cortex | TCTTTAATCC (2)
| 9.1 | 0.0091 |
| Hypothalamus | GAGAAGCCTG (2)
| 1.8 | 0.0018 |
| E12.5 retina | GAGAAGCCTG (2)
| 1.9 | 0.0019 |
| E14.5 retina | TCTTTAATCC (2) TGTGTAGTGT
| 25.5 | 0.0255 |
| E16.5 retina | GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 12.7 | 0.0127 |
| E18.5 retina | GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 7.2 | 0.0072 |
| P0.5 retina | CTGTCTTGAG TCTTTAATCC (2) TGTGTAGTGT
| 7.9 | 0.0079 |
| P2.5 retina | CTGTCTTGAG TCTTTAATCC (2) TGTGTAGTGT
| 8.9 | 0.0089 |
| P4.5 retina | TCTTTAATCC (2) TGTGTAGTGT
| 13.9 | 0.0139 |
| P6.5 retina | GAGAAGCCTG (2) TGTGTAGTGT
| 11.7 | 0.0117 |
| P10.5 crx- retina | CTGTCTTGAG GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 18.6 | 0.0186 |
| P10.5 crx+ retina | GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 5.7 | 0.0057 |
| Adult retinal | GAGAAGCCTG (2) TCTTTAATCC (2) TGTGTAGTGT
| 11.2 | 0.0112 |
| ONL | CTGTCTTGAG TCTTTAATCC (2) TGTGTAGTGT
| 19.1 | 0.0191 |