| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACTGGTGTAC ATTATGTGCA (4) GAGACAGTGT (2) TGGTTCTGGG (2) TTAAGCAAAA
| 11.4 | 0.0114 |
| Cb medulloblastoma | AAGGCTGCTT (2) ATTATGTGCA (4) CAGATGATGA GAGACAGTGT (2)
| 11.5 | 0.0115 |
| P8 GC+1d culture | ACTGGTGTAC TTAAGCAAAA
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | ACTGGTGTAC ATTATGTGCA (4) TTAAGCAAAA
| 3.6 | 0.0036 |
| 3T3 fibroblasts | ACTGGTGTAC TGGTTCTGGG (2)
| 10.5 | 0.0105 |
| E15 cortex | GCAAGAGACA GCTTTATGAG TTAAGCAAAA
| 19.7 | 0.0197 |
| P1 cortex | ACTGGTGTAC
| 9.1 | 0.0091 |
| Hypothalamus | ATTATGTGCA (4) GTATGAAATA TGGTTCTGGG (2)
| 12.6 | 0.0126 |
| E12.5 retina | ATTATGTGCA (4) GCAAGAGACA TGGTTCTGGG (2)
| 5.7 | 0.0057 |
| E14.5 retina | AAGGCTGCTT (2) AAGGTTGGGC ACTGGTGTAC TGGTTCTGGG (2)
| 16.4 | 0.0164 |
| E16.5 retina | AAGGCTGCTT (2) AAGGTTGGGC ACTGGTGTAC CAGATGATGA GAGACAGTGT (2) GCAAGAGACA TGGTTCTGGG (2)
| 16.2 | 0.0162 |
| E18.5 retina | CAGATGATGA
| 1.8 | 0.0018 |
| P0.5 retina | AAGGCTGCTT (2) ATTATGTGCA (4)
| 4 | 0.004 |
| P2.5 retina | AAGGTTGGGC GCAAGAGACA GTATGAAATA TTAAGCAAAA
| 7.2 | 0.0072 |
| P4.5 retina | ACTGGTGTAC ATTATGTGCA (4)
| 4 | 0.004 |
| P10.5 crx- retina | GTATGAAATA
| 1.9 | 0.0019 |
| P10.5 crx+ retina | ACTGGTGTAC GCAAGAGACA
| 3.8 | 0.0038 |
| Adult retinal | GCAAGAGACA TGGTTCTGGG (2)
| 5.6 | 0.0056 |
| ONL | ACTGGTGTAC GCTTTATGAG TGGTTCTGGG (2)
| 5.7 | 0.0057 |