Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.341886	1110067M05Rik	RIKEN cDNA 1110067M05 gene	11		68851
Mm.341886	Thrap1	thyroid hormone receptor associated protein 1	11		327987
Mm.341886	2700033K15Rik	RIKEN cDNA 2700033K15 gene	11		72594
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 179 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGCCAAAAA (4) AAGCCTTAAA (3) AATAATTTAT (3) ACAAACAATT (3) ATTTCAAAGC (2) CTTACATCCG (3) GAAGAAAATG (2) GAGGTGATGC (3) GGTCTGAGGA TAAAAAAGAA TGGATCAGTC 393.2 0.3932 Cb medulloblastoma AAGCAAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) GAAGAAAATG (2) TGGATCAGTC TGGTTTGAAG TTAAAAAGAA (5) 251.9 0.2519 P8 GC+1d culture AAGCAAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ACAAACAATT (3) ATTTCAAAGC (2) CATTTAATCC CTTTAATATT GAAGAAAATG (2) GCAGGAAGAG (3) GGTCTGAGGA TAAAAAAGAA TGGATCAGTC TTAAAAAGAA (5) TTCAGTAATG (3) TTGAAAAGAA (4) 290.7 0.2907 P8 GC+SHH+1d culture AAGCCTTCAA (3) ATTTCAAAGC (2) GAAGAAAATG (2) TAAAAAAGAA TGGATCAGTC TGGTTTGAAG TTAAAAAGAA (5) TTCAGTAATG (3) 330.3 0.3303 3T3 fibroblasts AAGCCTTCAA (3) CTTACATCCG (3) GGTCTGAGGA TAAAAAAGAA TGGATCAGTC 129.7 0.1297 E15 cortex CTTACATCCG (3) GAAGAAAATG (2) GGTCTGAGGA TGGATCAGTC 84 0.084 P1 cortex AAAACACTAA (3) ATTTCAAAGC (2) GAAGAAAATG (2) TAAAAAAGAA TGGATCAGTC TTCAGTAATG (3) 113.5 0.1135 Hypothalamus AATAATTTAT (3) GGTCTGAGGA TAAAAAAGAA TGGATCAGTC 220.9 0.2209 E12.5 retina AAGCCTTAAA (3) ATTTCAAAGC (2) CATTTAATCC CTTTAATATT GAAGAAAATG (2) GAGGTGATGC (3) GGTCTGAGGA TAAAAAAGAA TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) 518.4 0.5184 E14.5 retina AAGCAAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) GAAGAAAATG (2) TAAAAAAGAA TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) TTGAAAAGAA (4) 355.1 0.3551 E16.5 retina AAGCCTTCAA (3) ATTTCAAAGC (2) CATTTAATCC CTTTAATATT GAAGAAAATG (2) TAAAAAAGAA TGGATCAGTC TGGTTTGAAG TTGAAAAGAA (4) 429.1 0.4291 E18.5 retina AAGCAAAAAA (4) AAGCCAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) CTTTAATATT GAAGAAAATG (2) TGGATCAGTC TGGTTTGAAG 492.9 0.4929 P0.5 retina AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) TAAAAAAGAA TGGATCAGTC TTCAGTAATG (3) 212.1 0.2121 P2.5 retina AAGCAAAAAA (4) AAGCCAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) CTTTAATATT GAAGAAAATG (2) GGTCTGAGGA TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) 281.7 0.2817 P4.5 retina AAAACACTAA (3) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) GAAGAAAATG (2) GCAGGAAGAG (3) GGTCTGAGGA TAAAAAAGAA TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) TTGAAAAGAA (4) 257.8 0.2578 P6.5 retina AAGCCAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) AATAATTTAT (3) ATTTCAAAGC (2) GAAGAAAATG (2) GGTCTGAGGA TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) TTGAAAAGAA (4) 238.5 0.2385 P10.5 crx- retina AAGCCTTAAA (3) AATAATTTAT (3) ACAAACAATT (3) ATTTCAAAGC (2) CTTTAATATT GAAGAAAATG (2) TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) 215.6 0.2156 P10.5 crx+ retina AAGCCTTAAA (3) AAGCCTTCAA (3) ATTTCAAAGC (2) GAAGAAAATG (2) TGGATCAGTC TGGTTTGAAG TTCAGTAATG (3) 236.4 0.2364 Adult retinal AAAACACTAA (3) AAGCCTTCAA (3) ATTTCAAAGC (2) GAAGAAAATG (2) GCAGGAAGAG (3) GGTCTGAGGA TGGATCAGTC 98.4 0.0984 ONL AAAACACTAA (3) AAGCCAAAAA (4) AAGCCTTAAA (3) AAGCCTTCAA (3) ATTTCAAAGC (2) GAAGAAAATG (2) GAGGTGATGC (3) GGTCTGAGGA TGGATCAGTC TGGTTTGAAG 118.6 0.1186