| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG TACAATCAGA TGGTCTTTGG
| 221.8 | 0.2218 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG TGCAGCCTGG (2)
| 827.8 | 0.8278 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG TGCAGCCTGG (2) TTAAGTTCAG
| 218 | 0.218 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAAATAAAGG (3) TACAATCAGA TGGTCTTTGG TTAAGTTCAG TTTGAAATGG
| 289.4 | 0.2894 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2)
| 212.8 | 0.2128 |
| P1 cortex | AAAAAAAAAA (2) TACAATCAGA
| 259 | 0.259 |
| Hypothalamus | AAAAAAAAAA (2) AAAATAAAGG (3) TACAATCAGA TGGTCTTTGG TTTGAAATGG
| 135.8 | 0.1358 |
| E12.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG GATACAGCCT TTTGAAATGG
| 152.1 | 0.1521 |
| E14.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) GTCTGCAGAG
| 111.1 | 0.1111 |
| E16.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) TTAAGTTCAG
| 48.9 | 0.0489 |
| E18.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG TGGTCTTTGG
| 387.5 | 0.3875 |
| P0.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) TACAATCAGA TGGTCTTTGG
| 125.7 | 0.1257 |
| P2.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG
| 341.4 | 0.3414 |
| P4.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG
| 297.1 | 0.2971 |
| P6.5 retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG TGGTCTTTGG
| 275.2 | 0.2752 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG TTAAGTTCAG
| 55.8 | 0.0558 |
| P10.5 crx+ retina | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG GTCTGCAGAG
| 109.5 | 0.1095 |
| Adult retinal | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG GATACAGCCT TGGTCTTTGG
| 74.1 | 0.0741 |
| ONL | AAAAAAAAAA (2) AAAATAAAGG (3) CAATCATAGG GATACAGCCT TTTGAAATGG
| 132.1 | 0.1321 |