| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAACTCACAC (2) CCTTTAATCC (3) GAAATGTAAA
| 57.1 | 0.0571 |
| Cb medulloblastoma | CCTTTAATCC (3) GAGATCTGCC
| 43.9 | 0.0439 |
| P8 GC+1d culture | AAACTCACAC (2) CCTTTAATCC (3) GAAATGTAAA GAGATCTGCC
| 35.3 | 0.0353 |
| P8 GC+SHH+1d culture | AAACTCACAC (2) CCTTTAATCC (3) GAAATGTAAA GAGATCTGCC TTACTCTTTT
| 30.6 | 0.0306 |
| 3T3 fibroblasts | CCTTTAATCC (3)
| 70.1 | 0.0701 |
| E15 cortex | CCTTTAATCC (3) GCAGTGTTAC (2)
| 59.3 | 0.0593 |
| P1 cortex | CCTTTAATCC (3) GAGATCTGCC
| 159 | 0.159 |
| Hypothalamus | CCTTTAATCC (3) GAGATCTGCC
| 21.7 | 0.0217 |
| E12.5 retina | AAACTCACAC (2) CCTTTAATCC (3) GAGATCTGCC
| 78.9 | 0.0789 |
| E14.5 retina | CCTTTAATCC (3) GAAATGTAAA GCAGTGTTAC (2)
| 123.9 | 0.1239 |
| E16.5 retina | AAACTCACAC (2) CCTTTAATCC (3) GAAATGTAAA GCAGTGTTAC (2)
| 76 | 0.076 |
| E18.5 retina | CCTTTAATCC (3) GAAATGTAAA GAGATCTGCC
| 27.2 | 0.0272 |
| P0.5 retina | CCTTTAATCC (3) GAGATCTGCC GCAGTGTTAC (2) TTACTCTTTT
| 78.6 | 0.0786 |
| P2.5 retina | CCTTTAATCC (3) GAGATCTGCC GCAGTGTTAC (2)
| 74 | 0.074 |
| P4.5 retina | CCTTTAATCC (3) GAAATGTAAA
| 45.6 | 0.0456 |
| P6.5 retina | AAACTCACAC (2) CCTTTAATCC (3) GAGATCTGCC
| 73.4 | 0.0734 |
| P10.5 crx- retina | AAACTCACAC (2) CCTTTAATCC (3) TTACTCTTTT
| 68.8 | 0.0688 |
| P10.5 crx+ retina | CCTTTAATCC (3) GAGATCTGCC
| 40.3 | 0.0403 |
| Adult retinal | CCTTTAATCC (3)
| 129.6 | 0.1296 |
| ONL | AAACTCACAC (2) CCTTTAATCC (3)
| 86.2 | 0.0862 |