| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACCTGGTAGG (2)
| 1.6 | 0.0016 |
| P8 GC+1d culture | ACCTGGTAGG (2) GAAATAAATA (4)
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | GAAATAAATA (4)
| 2.3 | 0.0023 |
| 3T3 fibroblasts | ACCTGGTAGG (2)
| 7 | 0.007 |
| E15 cortex | ACCTGGTAGG (2) TGTGCCAGGT
| 9.8 | 0.0098 |
| Hypothalamus | TCAGAGTGAG (3) TGACATTTGT (3)
| 3.6 | 0.0036 |
| E12.5 retina | ACCTGGTAGG (2) TGACATTTGT (3)
| 15 | 0.015 |
| E14.5 retina | ACCTGGTAGG (2)
| 1.8 | 0.0018 |
| E18.5 retina | ACCTGGTAGG (2) GAAATAAATA (4)
| 5.4 | 0.0054 |
| P0.5 retina | ACCTGGTAGG (2)
| 2 | 0.002 |
| P2.5 retina | ACCTGGTAGG (2) TGACATTTGT (3) TGTGCCAGGT
| 5.4 | 0.0054 |
| P4.5 retina | ACCTGGTAGG (2) TCAGAGTGAG (3)
| 4 | 0.004 |
| P6.5 retina | ACCTGGTAGG (2) TCAGAGTGAG (3) TGTGCCAGGT
| 6.7 | 0.0067 |
| P10.5 crx- retina | ACCTGGTAGG (2) CTGAGAGTCA (4) TGACATTTGT (3)
| 9.4 | 0.0094 |
| P10.5 crx+ retina | CTGAGAGTCA (4)
| 1.9 | 0.0019 |
| Adult retinal | TGACATTTGT (3)
| 1.9 | 0.0019 |
| ONL | ACCTGGTAGG (2)
| 3.8 | 0.0038 |