Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3608	Pax6	paired box gene 6	2	2 E3 (2 58.0 cM)	18508
Gene Ontology	anterior/posterior pattern formation | axon guidance | brain development | cell differentiation | cell fate determination | development | DNA binding | eye morphogenesis (sensu Mammalia) | eye morphogenesis (sensu Mammalia) | eye photoreceptor cell development | metanephros development | nucleus | regulation of cell migration | regulation of transcription, DNA-dependent | salivary gland morphogenesis | transcription factor activity | transcription factor complex
Human Homolog	PAX6[paired box gene 6 (aniridia, keratitis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 82 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAATCATTTG CCAAAGCCTT GCTGCCCTAC (2) GGCACCTCGG GGTCCATAGT (2) GTTTTTTTTT (2) TGATCGAGAG (2) 35.8 0.0358 Cb medulloblastoma CCAAAGCCTT GTTTTTTTTT (2) 9.2 0.0092 P8 GC+1d culture CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GTTTTTTTTT (2) 23.9 0.0239 P8 GC+SHH+1d culture CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GGTCCATAGT (2) GTTTTTTTTT (2) 22.2 0.0222 3T3 fibroblasts GGTCCATAGT (2) 3.5 0.0035 P1 cortex GCTGCCCTAC (2) 9.1 0.0091 Hypothalamus GCTGCCCTAC (2) GGAGCAGCTG 9 0.009 E12.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GGTCCATAGT (2) 48.9 0.0489 E14.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GTTTTTTTTT (2) TGATCGAGAG (2) 20 0.02 E16.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) 30.8 0.0308 E18.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GTTTTTTTTT (2) 41.8 0.0418 P0.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GGAGCAGCTG GGCACCTCGG GTTTTTTTTT (2) TGATCGAGAG (2) 57.1 0.0571 P2.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGGTGGTT 35.2 0.0352 P4.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GCTGGTGGTT GGCACCTCGG GTTTTTTTTT (2) 47.6 0.0476 P6.5 retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GGTCCATAGT (2) 25 0.025 P10.5 crx- retina CAATCATTTG CCAAAGCCTT GATTTAAGAG GTTTTTTTTT (2) TGATCGAGAG (2) 26.1 0.0261 P10.5 crx+ retina CCAAAGCCTT GCTGGTGGTT GGAGCAGCTG GTTTTTTTTT (2) 17.2 0.0172 Adult retinal CAATCATTTG CCAAAGCCTT GATTTAAGAG GCTGCCCTAC (2) GCTGGTGGTT 26.1 0.0261 ONL CAATCATTTG CCAAAGCCTT 7.6 0.0076