| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AAAAAGTACC GCCCCTTTTG (2)
| 210.5 | 0.2105 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAAAAATTAA AAAAAGTACC AAGAGTAGCC GAAAAAAAAG GCCCCTTCTT GCCCCTTTTG (2) GCCCTTCTGG (2)
| 850.9 | 0.8509 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAAAAATTAA AAAAAGTACC GAAAAAAAAG GCCCCTTCTT GCCCCTTTTG (2) GCCCTTCTGG (2) GCCCTTTCTC
| 239.6 | 0.2396 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAAAAATTAA AAAAAGTACC AAGAGTAGCC GAAAAAAAAG GAAGAAGTAG (3) GCCCCTTCTT GCCCCTTTTG (2)
| 305.7 | 0.3057 |
| 3T3 fibroblasts | AAAAAAAAAA (2) AAAAAGTACC GCCCCTTCTT
| 35 | 0.035 |
| E15 cortex | AAAAAAAAAA (2) GAAGAAGTAG (3) GCCCCTTTTG (2)
| 222.6 | 0.2226 |
| P1 cortex | AAAAAAAAAA (2) GAAAAAAAAG GCCCCTTCTT
| 259 | 0.259 |
| Hypothalamus | AAAAAAAAAA (2) AAAAAGTACC AAGAGTAGCC GAAAAAAAAG GAAGAAGTAG (3) GCCCCTTCTT GCCTTCTTCT (2) TGAAAGAAAC
| 148.5 | 0.1485 |
| E12.5 retina | AAAAAAAAAA (2) AAAAAGTACC GAAGAAGTAG (3)
| 146.4 | 0.1464 |
| E14.5 retina | AAAAAAAAAA (2) GAAGAAGTAG (3) GCCCCTTTTG (2) GCCCTTTCTC GCCTTCTTCT (2) GCTTTGGCAA
| 103.7 | 0.1037 |
| E16.5 retina | AAAAAAAAAA (2) AAAAAATTAA GAAGAAGTAG (3) GCCCCTTCTT GCCCCTTTTG (2) GCCCTTTCTC GCCTTCTTCT (2) TGAAAGAAAC
| 61.5 | 0.0615 |
| E18.5 retina | AAAAAAAAAA (2) AAAAAGTACC GAAAAAAAAG GCCCCTTCTT GCCTTTTCAG
| 387.3 | 0.3873 |
| P0.5 retina | AAAAAAAAAA (2) AAAAAGTACC GAAAAAAAAG GAAGAAGTAG (3) GCCCCTTCTT GCCCCTTTTG (2)
| 135.6 | 0.1356 |
| P2.5 retina | AAAAAAAAAA (2) AAAAAGTACC GAAAAAAAAG GCCCCTTCTT GCCCCTTTTG (2) GCCCTTTCTC
| 345.1 | 0.3451 |
| P4.5 retina | AAAAAAAAAA (2) AAAAAGTACC GAAAAAAAAG GAAGAAGTAG (3) GCCCCTTCTT GCCCCTTTTG (2) GCCCTTTCTC GCCTTTTCAG
| 299.3 | 0.2993 |
| P6.5 retina | AAAAAAAAAA (2) AAAAAGTACC GAAAAAAAAG GCCCCTTTTG (2) GCCCTTCTGG (2) GCCCTTTCTC GCCTTTTCAG GCTTTGGCAA
| 283.6 | 0.2836 |
| P10.5 crx- retina | AAAAAAAAAA (2) GCCCCTTTTG (2) GCCCTTCTGG (2) GCCTTTTCAG
| 55.8 | 0.0558 |
| P10.5 crx+ retina | AAAAAAAAAA (2) GAAGAAGTAG (3) GCCCCTTTTG (2) GCCCTTCTGG (2) GCCCTTTCTC GCCTTTTCAG
| 107.5 | 0.1075 |
| Adult retinal | AAAAAAAAAA (2) AAAAAGTACC GAAGAAGTAG (3) GCCCTTCTGG (2) TGAAAGAAAC
| 70.5 | 0.0705 |
| ONL | AAAAAAAAAA (2) AAAAAATTAA AAAAAGTACC AAGGAGTTAG GCCCTTCTGG (2) GCTTTGGCAA
| 114.8 | 0.1148 |