| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAGTTGCC (3) GCCCTGCTGG (4) TTTAAAAAAT
| 4.8 | 0.0048 |
| Cb medulloblastoma | AAAAGTTGCC (3)
| 4.6 | 0.0046 |
| P8 GC+1d culture | AAAAGTTGCC (3) GCCCTGCTGG (4) TTTAAAAAAT
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | AAAAGTTGCC (3) GCCCTGCTGG (4)
| 7 | 0.007 |
| 3T3 fibroblasts | AAGCCAGTGA (5)
| 7 | 0.007 |
| E15 cortex | AAAAGTTGCC (3) AAGCCAGTGA (5)
| 9.8 | 0.0098 |
| P1 cortex | AAAAGTTGCC (3)
| 4.5 | 0.0045 |
| E12.5 retina | AAGCCAGTGA (5)
| 3.8 | 0.0038 |
| E16.5 retina | AAAAGTTGCC (3)
| 5.4 | 0.0054 |
| P2.5 retina | AAAAGTTGCC (3) GCCCTGCTGG (4)
| 3.6 | 0.0036 |
| P4.5 retina | AAAAGTTGCC (3) GCCCTGCTGG (4) TTTAAAAAAT
| 11.9 | 0.0119 |
| P6.5 retina | TTTAAAAAAT
| 1.7 | 0.0017 |
| P10.5 crx- retina | AAAAGTTGCC (3) GCCCTGCTGG (4)
| 5.6 | 0.0056 |
| P10.5 crx+ retina | AAAAGTTGCC (3) AAGCCAGTGA (5)
| 5.7 | 0.0057 |
| Adult retinal | AAAAGTTGCC (3)
| 3.7 | 0.0037 |
| ONL | AAAAGTTGCC (3) AAGCCAGTGA (5) GCCCTGCTGG (4)
| 13.3 | 0.0133 |