Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3779	Bap1	Brca1 associated protein 1	14		104416
Gene Ontology	hydrolase activity | intracellular | negative regulation of cell proliferation | nucleus | protein binding | protein deubiquitination | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	BAP1[BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 66 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGGGAGGCC GCAGCTTCCT (2) GCCAGGGCCA (2) TCTTCTCTTA 8.1 0.0081 Cb medulloblastoma GCCAGGGCCA (2) GGCAGCTGTC GGGGGGGGGG 18.4 0.0184 P8 GC+1d culture AGCCTGATGG GCCAGGGCCA (2) GGGGGGGGGG TCTTCTCTTA TTTTTTTTTA 18.2 0.0182 P8 GC+SHH+1d culture GCCAGGGCCA (2) GGCAGCTGTC GGGGGGGGGG TCTTCTCTTA 14 0.014 3T3 fibroblasts CACGCGCGCG GCCAGGGCCA (2) GGCAGCTGTC GGGGGGGGGG 14 0.014 E15 cortex AGCCTGATGG CACGCGCGCG CTGGGAGGCC GCAGCTTCCT (2) GCCAGGGCCA (2) GGGGGGGGGG 34.4 0.0344 P1 cortex GCCAGGGCCA (2) TCTTCTCTTA TGCCCACACA TTTTTTTTTA 27.1 0.0271 Hypothalamus CACGCGCGCG GCCAGGGCCA (2) GGGGGGGGGG 9 0.009 E12.5 retina TCTTCTCTTA 1.9 0.0019 E14.5 retina AGCCTGATGG GCCAGGGCCA (2) 9.1 0.0091 E16.5 retina GCCAGGGCCA (2) 5.4 0.0054 E18.5 retina GCCAGGGCCA (2) TGCCCACACA 5.4 0.0054 P0.5 retina GCCAGGGCCA (2) TCTTCTCTTA 17.7 0.0177 P2.5 retina GCCAGGGCCA (2) GGGGGGGGGG TTTTTTTTTA 15.8 0.0158 P4.5 retina CTGGGAGGCC GCAGCTTCCT (2) GCCAGGGCCA (2) GGGGGGGGGG TCTTCTCTTA 19.9 0.0199 P6.5 retina GCCAGGGCCA (2) GGGGGGGGGG TCTTCTCTTA 6.7 0.0067 P10.5 crx- retina AGCCTGATGG GCCAGGGCCA (2) TCTTCTCTTA 13.1 0.0131 P10.5 crx+ retina GCCAGGGCCA (2) GGGGGGGGGG 15.4 0.0154 Adult retinal AGCCTGATGG GCCAGGGCCA (2) GGGGGGGGGG TCTTCTCTTA TGCCCACACA 15 0.015 ONL CACGCGCGCG GCCAGGGCCA (2) GGGGGGGGGG TGCCCACACA 11.4 0.0114