| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAGCAAATGA (2) GCTGTGTATT TGTGGAAGTG (2)
| 18 | 0.018 |
| Cb medulloblastoma | AAAAACTCAA TGTGGAAGTG (2)
| 6.9 | 0.0069 |
| P8 GC+1d culture | AAGCAAATGA (2) GCTGTGTATT TGTGGAAGTG (2)
| 10.3 | 0.0103 |
| P8 GC+SHH+1d culture | AAAAACTCAA GCTCTGCAAG GCTGTGTATT TGTGGAAGTG (2)
| 10.6 | 0.0106 |
| 3T3 fibroblasts | GCTGTGTATT
| 3.5 | 0.0035 |
| E15 cortex | GCTGTGTATT
| 4.9 | 0.0049 |
| Hypothalamus | AAGCAAATGA (2) GCTCTGCAAG TGTGGAAGTG (2)
| 9 | 0.009 |
| E12.5 retina | GCTGTGTATT TGTGGAAGTG (2)
| 5.7 | 0.0057 |
| E14.5 retina | GCTGTGTATT
| 9.1 | 0.0091 |
| E16.5 retina | AAGCAAATGA (2) GCTCTGCAAG GCTGTGTATT TGTGGAAGTG (2) TTGGTTTCCT
| 16.2 | 0.0162 |
| E18.5 retina | AAAAACTCAA GCTGTGTATT TGTGGAAGTG (2)
| 10.9 | 0.0109 |
| P0.5 retina | AAGCAAATGA (2) GCTCTGCAAG GCTGTGTATT TGTGGAAGTG (2)
| 19.7 | 0.0197 |
| P2.5 retina | GCTGTGTATT TGTGGAAGTG (2) TTGGTTTCCT
| 15.8 | 0.0158 |
| P4.5 retina | GCTGTGTATT TGTGGAAGTG (2)
| 6 | 0.006 |
| P6.5 retina | AAAAACTCAA TGTGGAAGTG (2) TTGGTTTCCT
| 16.7 | 0.0167 |
| P10.5 crx- retina | TGTGGAAGTG (2) TTGGTTTCCT
| 26 | 0.026 |
| P10.5 crx+ retina | AAAAACTCAA TGTGGAAGTG (2) TTGGTTTCCT
| 9.5 | 0.0095 |
| Adult retinal | AAGCAAATGA (2) GCTCTGCAAG TGTGGAAGTG (2) TTGGTTTCCT
| 24.2 | 0.0242 |
| ONL | AAGCAAATGA (2) TTGGTTTCCT
| 7.6 | 0.0076 |