| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACTTCCTGTG CTTTTCTGAA TAAAATGATT TACGTTTGGT
| 35.9 | 0.0359 |
| Cb medulloblastoma | GATAAAGAAA (2) TAAAATGATT TACGTTTGGT
| 11.5 | 0.0115 |
| P8 GC+1d culture | ACTTCCTGTG GAGAAATAAA GAGGAGCAGG (2) TAAAATGATT TAAGAAATTG TACGTTTGGT
| 30.7 | 0.0307 |
| P8 GC+SHH+1d culture | CTTTTCTGAA GAGAAATAAA GAGGAGCAGG (2) GATAAAGAAA (2) TAAAATGATT TACGTTTGGT
| 36.2 | 0.0362 |
| 3T3 fibroblasts | GGAGGAGCAG TACGTTTGGT
| 10.5 | 0.0105 |
| E15 cortex | ACTTCCTGTG GAGAAATAAA TACGTTTGGT
| 14.7 | 0.0147 |
| P1 cortex | TAAAATGATT TACGTTTGGT
| 9 | 0.009 |
| Hypothalamus | GGAGGAGCAG TACGTTTGGT
| 14.5 | 0.0145 |
| E12.5 retina | CTTTTCTGAA GAGGAGCAGG (2) GATAAAGAAA (2) TACGTTTGGT
| 31.9 | 0.0319 |
| E14.5 retina | CTTTTCTGAA GAGGAGCAGG (2) GATAAAGAAA (2) GGAGGAGCAG TACGTTTGGT
| 23.6 | 0.0236 |
| E16.5 retina | GAGAAATAAA GAGGAGCAGG (2) TACGTTTGGT
| 34.4 | 0.0344 |
| E18.5 retina | CTTTTCTGAA GAGAAATAAA GATAAAGAAA (2) TAAAATGATT TACGTTTGGT
| 18.2 | 0.0182 |
| P0.5 retina | CTTTTCTGAA TAAAATGATT TAAGAAATTG TACGTTTGGT
| 25.5 | 0.0255 |
| P2.5 retina | GAGAAATAAA GATAAAGAAA (2) GGAGGAGCAG TAAAATGATT TACGTTTGGT
| 35.2 | 0.0352 |
| P4.5 retina | CTTTTCTGAA GAGAAATAAA TAAAATGATT TACGTTTGGT
| 23.8 | 0.0238 |
| P6.5 retina | GAGAAATAAA GAGGAGCAGG (2) TAAAATGATT TACGTTTGGT
| 21.7 | 0.0217 |
| P10.5 crx- retina | TACGTTTGGT
| 9.3 | 0.0093 |
| P10.5 crx+ retina | GAGGAGCAGG (2) TACGTTTGGT
| 11.5 | 0.0115 |
| Adult retinal | GAGGAGCAGG (2) TACGTTTGGT
| 14.9 | 0.0149 |
| ONL | ACTTCCTGTG TACGTTTGGT
| 7.6 | 0.0076 |