Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.38993	Clstn1	calsyntenin 1	4	4	65945
Gene Ontology	calcium ion binding | calcium ion homeostasis | cell adhesion | homophilic cell adhesion | integral to membrane | membrane | postsynaptic membrane | protein binding
Human Homolog	CLSTN1[calsyntenin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACTAGTTTG GGCTTTCCAG GGGTTGGCCC TATAAAGTGG TCCCTGAAGA (2) TCCTGTCCCC 21.2 0.0212 Cb medulloblastoma GCTGCCCAGC GGAGGGCGGG GGCTTTCCAG TCCTGTCCCC 23.1 0.0231 P8 GC+1d culture CACTAGTTTG GAGACATATG (2) GCTGCCCAGC GGCTTTCCAG GGGTTGGCCC TATAAAGTGG TCCTGTCCCC 21.5 0.0215 P8 GC+SHH+1d culture CACTAGTTTG GAGACATATG (2) GCTCTGCAGT (2) GGAGGGCGGC TCCCTGAAGA (2) TCCTGTCCCC 17.7 0.0177 3T3 fibroblasts GGCTTTCCAG TCCTGTCCCC 7 0.007 E15 cortex TCCTGTCCCC 4.9 0.0049 P1 cortex TCCTGTCCCC 4.5 0.0045 Hypothalamus CACTAGTTTG GAGACATATG (2) GCTCTGCAGT (2) GGAGGGCGGC GGCTTTCCAG TATAAAGTGG TCCTGTCCCC 27.1 0.0271 E12.5 retina CACTAGTTTG GCTGCCCAGC GGCTTTCCAG TATAAAGTGG TCCCTGAAGA (2) 11.4 0.0114 E14.5 retina ACACAGGAAG (2) GCTGCCCAGC GGGCCCTGGG TATAAAGTGG TCCTGTCCCC 16.4 0.0164 E16.5 retina ACACAGGAAG (2) GGCTTTCCAG TCCCTGAAGA (2) TCCTGTCCCC 12.6 0.0126 E18.5 retina ACACAGGAAG (2) GGAGGGCGGG GGCTTTCCAG TATAAAGTGG TCCTGTCCCC TTCCCCCCCC (5) 10.8 0.0108 P0.5 retina CACTAGTTTG GGAGGGCGGC GGCTTTCCAG TCCTGTCCCC 19.7 0.0197 P2.5 retina CACTAGTTTG GCTGCCCAGC GGCTTTCCAG TCCCTGAAGA (2) TCCTGTCCCC 21.3 0.0213 P4.5 retina CACTAGTTTG GAGACATATG (2) GGAGGGCGGC GGCTTTCCAG TATAAAGTGG TCCTGTCCCC 23.9 0.0239 P6.5 retina CACTAGTTTG GAGACATATG (2) GGAGGGCGGC GGAGGGCGGG TCCCTGAAGA (2) TCCTGTCCCC TTCCCCCCCC (5) 38.4 0.0384 P10.5 crx- retina GCTCTGCAGT (2) GGAGGGCGGC GGCTTTCCAG TCCTGTCCCC 18.7 0.0187 P10.5 crx+ retina CACTAGTTTG GCTGCCCAGC GGAGGGCGGC GGCTTTCCAG GGGTTGGCCC TATAAAGTGG TCCTGTCCCC 53.8 0.0538 Adult retinal CACTAGTTTG GAGACATATG (2) GGAGGGCGGG GGCTTTCCAG TATAAAGTGG TCCTGTCCCC 35.4 0.0354 ONL CACTAGTTTG GAGACATATG (2) GGCTTTCCAG TCCTGTCCCC 30.6 0.0306