Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3981	Cops6	COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)	5	5 G2	26893
Gene Ontology	protein binding | signalosome complex
Human Homolog	COPS6[COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGCACTTTT (2) GACCTGAGTA (2) GAGAGGCCAG GAGATCCTGG (2) GTTGAAGGGA TCACAGCTCC 48.9 0.0489 Cb medulloblastoma CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) GCCTACCTCG 25.4 0.0254 P8 GC+1d culture CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) TACACAACAC TCACAGCTCC 46.6 0.0466 P8 GC+SHH+1d culture CGCTCCCAGG CTGCACTTTT (2) GAACAGCTGT (2) GACCTGAGTA (2) GAGATCCTGG (2) TACACAACAC TCACAGCTCC 65.7 0.0657 3T3 fibroblasts AAAGCTGAAC CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) 31.5 0.0315 E15 cortex CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) GCCTACCTCG 29.5 0.0295 P1 cortex GACCTGAGTA (2) GAGATCCTGG (2) GCTCCCAGGA 13.5 0.0135 Hypothalamus GACCTGAGTA (2) GAGATCCTGG (2) 29 0.029 E12.5 retina CTGCACTTTT (2) GAACAGCTGT (2) GACCTGAGTA (2) GAGATCCTGG (2) TCACAGCTCC 65.8 0.0658 E14.5 retina CTGCACTTTT (2) GAACAGCTGT (2) GACCTGAGTA (2) GCTCCCAGGA 45.5 0.0455 E16.5 retina CGCTCCCAGG CTGCACTTTT (2) GAACAGCTGT (2) GACCTGAGTA (2) GAGATCCTGG (2) 86.9 0.0869 E18.5 retina CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) 74.6 0.0746 P0.5 retina CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) GCTCCCAGGA 66.8 0.0668 P2.5 retina CTGCACTTTT (2) GACCTGAGTA (2) 44 0.044 P4.5 retina CTGCACTTTT (2) GACCTGAGTA (2) GAGATCCTGG (2) GTTGAAGGGA 61.5 0.0615 P6.5 retina CTGCACTTTT (2) GACCTGAGTA (2) GAGAGGCCAG GAGATCCTGG (2) GTTGAAGGGA TACACAACAC 25.1 0.0251 P10.5 crx- retina CTGCACTTTT (2) GAACAGCTGT (2) GACCTGAGTA (2) GAGATCCTGG (2) GTTGAAGGGA TACACAACAC TCACAGCTCC 46.6 0.0466 P10.5 crx+ retina AAAGCTGAAC GACCTGAGTA (2) GAGATCCTGG (2) 57.6 0.0576 Adult retinal GACCTGAGTA (2) GAGATCCTGG (2) GCCTACCTCG GCTCCCAGGA TACACAACAC 18.7 0.0187 ONL AAAGCTGAAC CTGCACTTTT (2) GACCTGAGTA (2) 15.3 0.0153