| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 GC+1d culture | ACACAGAAAC (3) GTGGTAGGTT TGGCCCTGGT
| 4.5 | 0.0045 |
| P8 GC+SHH+1d culture | GCAGCTGCTG GTTGTGCTCT
| 2.4 | 0.0024 |
| 3T3 fibroblasts | ACACAGAAAC (3)
| 10.5 | 0.0105 |
| P1 cortex | ACACAGAAAC (3) TGGCCCTGGT
| 27.2 | 0.0272 |
| Hypothalamus | ACACAGAAAC (3) CTATTTAATG TCACCTGTTG TGGCCCTGGT
| 9 | 0.009 |
| E12.5 retina | CTATTTAATG TGGCCCTGGT
| 3.8 | 0.0038 |
| E14.5 retina | GTGCAGGCAG (2)
| 9.1 | 0.0091 |
| E16.5 retina | CTATTTAATG GTGGTAGGTT
| 5.4 | 0.0054 |
| E18.5 retina | GTGCAGGCAG (2) GTTGTGCTCT
| 3.6 | 0.0036 |
| P0.5 retina | GTGGTAGGTT GTTGTGCTCT
| 4 | 0.004 |
| P2.5 retina | ACACAGAAAC (3) ATTTAATTTA CTATTTAATG
| 5.4 | 0.0054 |
| P4.5 retina | CTATTTAATG GTGGTAGGTT
| 13.9 | 0.0139 |
| P6.5 retina | ATTTAATTTA CTATTTAATG GTGGTAGGTT TCACCTGTTG
| 15 | 0.015 |
| P10.5 crx- retina | CTATTTAATG GCAGCTGCTG TCACCTGTTG
| 7.5 | 0.0075 |
| P10.5 crx+ retina | ATTTAATTTA CTATTTAATG GCAGCTGCTG
| 19.2 | 0.0192 |
| Adult retinal | ATTTAATTTA CTATTTAATG GCAGCTGCTG GTGCAGGCAG (2) GTGGTAGGTT TCACCTGTTG
| 16.9 | 0.0169 |
| ONL | ATTTAATTTA CTATTTAATG GTTGTGCTCT TCACCTGTTG
| 22.9 | 0.0229 |