| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) ATCCGAAAGA (2) GACAAAAAAA
| 282.2 | 0.2822 |
| Cb medulloblastoma | AAAAAAAAAA (2) ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA GATCTTAAAC GTCCGAAAGA
| 825.5 | 0.8255 |
| P8 GC+1d culture | AAAAAAAAAA (2) ATCCGAAAGA (2) GACAAAAAAA GATCTTAAAC GTCCGAAAGA TCTGGATCCT
| 297.8 | 0.2978 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AACAACCTCT ATCCGAAAGA (2) ATGGCGCCTC GAAGAAAACA (2) GACAAAAAAA TCTGGATCCT
| 377.1 | 0.3771 |
| 3T3 fibroblasts | AAAAAAAAAA (2) AACAACCTCT ATCCGAAAGA (2) ATGGCGCCTC
| 133.1 | 0.1331 |
| E15 cortex | AAAAAAAAAA (2) AGCCGAACCA ATCCGAAAGA (2) GAAGAAAACA (2)
| 286.9 | 0.2869 |
| P1 cortex | AAAAAAAAAA (2) ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA TTAAGTCTTT
| 336.2 | 0.3362 |
| Hypothalamus | AAAAAAAAAA (2) AACAACCTCT ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA TTAAGTCTTT
| 168.4 | 0.1684 |
| E12.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) ATGGCGCCTC GAAGAAAACA (2) GACAAAAAAA GATGATGAAA (2)
| 255.4 | 0.2554 |
| E14.5 retina | AAAAAAAAAA (2) AGCCGAACCA ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA
| 147.5 | 0.1475 |
| E16.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) GAAGAAAACA (2) GATCTTAAAC
| 105.1 | 0.1051 |
| E18.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA GATCTTAAAC GATGATGAAA (2)
| 421.9 | 0.4219 |
| P0.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) ATGGCGCCTC GATCTTAAAC GTCCGAAAGA
| 186.5 | 0.1865 |
| P2.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) GATCTTAAAC GTCCGAAAGA TTAAGTCTTT
| 380.3 | 0.3803 |
| P4.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA GATCTTAAAC
| 328.9 | 0.3289 |
| P6.5 retina | AAAAAAAAAA (2) ATCCGAAAGA (2) GAAGAAAACA (2) GACAAAAAAA TCTGGATCCT
| 303.5 | 0.3035 |
| P10.5 crx- retina | AAAAAAAAAA (2) AGCCGAACCA ATCCGAAAGA (2)
| 89.2 | 0.0892 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ATCCGAAAGA (2) ATGGCGCCTC GACAAAAAAA
| 124.9 | 0.1249 |
| Adult retinal | AAAAAAAAAA (2) AACAACCTCT ATCCGAAAGA (2) GACAAAAAAA
| 85.3 | 0.0853 |
| ONL | AAAAAAAAAA (2) ATCCGAAAGA (2) GACAAAAAAA
| 134 | 0.134 |