Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4352	Col18a1	procollagen, type XVIII, alpha 1	10	10 41.3 cM	12822
Gene Ontology	angiogenesis | angiogenesis | basement membrane | cell adhesion | collagen | cytoplasm | development | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | membrane | phosphate transport | positive regulation of apoptosis | positive regulation of cell migration | positive regulation of cell proliferation | protein binding | structural molecule activity | transmembrane receptor activity
Human Homolog	COL18A1[collagen, type XVIII, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 44 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGCACTTGT AGGGCAGTCC (2) CAGAACTTTG GCCTCCTGGG (4) 13 0.013 Cb medulloblastoma AAAGGACTTG (2) AAGCACTTGT CAGAACTTTG 6.9 0.0069 P8 GC+1d culture AAGCACTTGT AAGGACTTGT AGGGCAGTCC (2) CAGAACTTTG GCCTCCTGGG (4) 17 0.017 P8 GC+SHH+1d culture AAGCACTTGT CAGAACTTTG GCCTCCTGGG (4) GCCTCTGTCT 16.4 0.0164 3T3 fibroblasts GCCTCCTGGG (4) 3.5 0.0035 E15 cortex CAGAACTTTG GCCTCCTGGG (4) 9.8 0.0098 E12.5 retina AAGCACTTGT GCCTCCTGGG (4) 15.1 0.0151 E14.5 retina AAGCACTTGT CAGAACTTTG GCCTCCTGGG (4) 14.5 0.0145 E16.5 retina AAGCACTTGT GCCTCCTGGG (4) 9 0.009 E18.5 retina AAGCACTTGT 1.8 0.0018 P0.5 retina AAAGGACTTG (2) AAGGACTTGT GCCTCCTGGG (4) 7.9 0.0079 P2.5 retina CAGAACTTTG GCCTCCTGGG (4) 3.6 0.0036 P4.5 retina AGGGCAGTCC (2) 2 0.002 P6.5 retina AAGCACTTGT AAGTGCTGCT (3) GCCTCCTGGG (4) 8.4 0.0084 P10.5 crx- retina GCCTCCTGGG (4) 11.1 0.0111 P10.5 crx+ retina AAAGGACTTG (2) GCCTCCTGGG (4) GCCTCTGTCT 9.6 0.0096 Adult retinal AAGTGCTGCT (3) GCCTCCTGGG (4) GCCTCTGTCT 13.1 0.0131 ONL GCCTCCTGGG (4) 1.9 0.0019