Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4406	Mmp9	matrix metalloproteinase 9	2	2 96.0 cM	17395
Gene Ontology	collagen catabolism | extracellular matrix | extracellular space | gelatinase B activity | hydrolase activity | metalloendopeptidase activity | metallopeptidase activity | proteolysis and peptidolysis | zinc ion binding
Human Homolog	MMP9[matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 22 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGCAGCTGG (3) 1.6 0.0016 Cb medulloblastoma CTGCAGCTGG (3) 4.6 0.0046 P8 GC+1d culture AGGTGAACCA (2) CTGCAGCTGC (2) TGTGCTAGAG 7.9 0.0079 P8 GC+SHH+1d culture TGTGCTAGAG 2.3 0.0023 3T3 fibroblasts AGGTGAACCA (2) 3.5 0.0035 P1 cortex AGGTGAACCA (2) 4.5 0.0045 Hypothalamus CTGCAGCTGC (2) 1.8 0.0018 E12.5 retina CTGCAGCTGC (2) 7.5 0.0075 E14.5 retina AGGTGAACCA (2) CTGCAGCTGC (2) 3.6 0.0036 E18.5 retina CTGGAGCTGC (3) 5.5 0.0055 P0.5 retina CTGCAGCTGG (3) 2 0.002 P2.5 retina AGGACAGTGG AGGTGAACCA (2) 5.3 0.0053 P10.5 crx- retina CTGCAGCTGG (3) 1.9 0.0019 P10.5 crx+ retina AGGACAGTGG CTGCAGCTGG (3) 3.8 0.0038 Adult retinal AGGTGAACCA (2) CTGCAGCTGG (3) 5.6 0.0056 ONL CTGGAGCTGC (3) 3.8 0.0038