| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GCGGGGACTT GTGTTTTGAG TGCATATGCT
| 4.8 | 0.0048 |
| Cb medulloblastoma | CATTTTGTAT (2)
| 4.6 | 0.0046 |
| P8 GC+1d culture | TGCATATGCT
| 9.1 | 0.0091 |
| P8 GC+SHH+1d culture | AAAGTCTGCC (2) CAGTTGATTT TGCATATGCT
| 10.6 | 0.0106 |
| 3T3 fibroblasts | AAAGTCTGCC (2) TGCATATGCT
| 24.5 | 0.0245 |
| E15 cortex | CAGTTGATTT TGCATATGCT
| 9.8 | 0.0098 |
| P1 cortex | TGCATATGCT
| 4.5 | 0.0045 |
| Hypothalamus | TGCATATGCT TTCCTGTTCA
| 7.2 | 0.0072 |
| E12.5 retina | AATAAATATT (2) GTGTTTTGAG TGCATATGCT
| 5.7 | 0.0057 |
| E14.5 retina | AAAGTCTGCC (2) AATAAATATT (2) CATTTTGTAT (2) TGCATATGCT TTCCTGTTCA
| 14.5 | 0.0145 |
| E16.5 retina | CAGTTGATTT TGCATATGCT
| 7.2 | 0.0072 |
| E18.5 retina | AATAAATATT (2) CATTTTGTAT (2) TGCATATGCT
| 5.4 | 0.0054 |
| P0.5 retina | GCGGGGACTT TGCATATGCT
| 9.8 | 0.0098 |
| P2.5 retina | CATTTTGTAT (2) TGCATATGCT
| 3.6 | 0.0036 |
| P4.5 retina | AATAAATATT (2) CATTTTGTAT (2) GTGTTTTGAG TTCCTGTTCA
| 10 | 0.01 |
| P6.5 retina | CATTTTGTAT (2) TGCATATGCT
| 13.3 | 0.0133 |
| P10.5 crx- retina | CAGTTGATTT TGCATATGCT
| 5.6 | 0.0056 |
| P10.5 crx+ retina | GCGGGGACTT TGCATATGCT TTACACAATG
| 13.4 | 0.0134 |
| Adult retinal | AATAAATATT (2) CAGTTGATTT CATTTTGTAT (2) TTACACAATG
| 13.1 | 0.0131 |
| ONL | TTACACAATG
| 1.9 | 0.0019 |