Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4494	Pkp1	plakophilin 1	1		18772
Gene Ontology	cell adhesion | cytoskeleton | desmosome | nucleus | protein binding | structural molecule activity
Human Homolog	PKP1[plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 31 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCTCAAACC (3) TATTTGCTTT (2) 21.3 0.0213 Cb medulloblastoma ATCTCAAACC (3) 2.3 0.0023 P8 GC+1d culture ATCTCAAACC (3) TATTTGCTTT (2) 10.3 0.0103 P8 GC+SHH+1d culture ATCTCAAACC (3) TATTTGCTTT (2) 14 0.014 P1 cortex ATCTCAAACC (3) 4.5 0.0045 Hypothalamus ATCTCAAACC (3) TATTTGCTTT (2) 18.1 0.0181 E12.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 15 0.015 E14.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 29.2 0.0292 E16.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 27.2 0.0272 E18.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 34.6 0.0346 P0.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 7.9 0.0079 P2.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 19.3 0.0193 P4.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 37.6 0.0376 P6.5 retina ATCTCAAACC (3) TATTTGCTTT (2) 28.4 0.0284 P10.5 crx- retina ATCTCAAACC (3) 1.9 0.0019 P10.5 crx+ retina ATCTCAAACC (3) TATTTGCTTT (2) 11.5 0.0115 Adult retinal TATTTGCTTT (2) 1.9 0.0019 ONL TATTTGCTTT (2) 5.7 0.0057