Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.45125
1300002C08Rik
RIKEN cDNA 1300002C08 gene
3
67472
Human Homolog
CHPPR[likely ortholog of chicken chondrocyte protein with a poly-proline region]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 38 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AATGGCATCA
(
4
)
GCCTCTGCAT (
2
)
GTAAACTACT
11.4
0.0114
Cb medulloblastoma
AATGGCATCA
(
4
)
GCCTCTGCAT (
2
)
9.2
0.0092
P8 GC+1d culture
AGTAAATATT
GCCTCTGCAT (
2
)
GTAAACTACT
22.7
0.0227
P8 GC+SHH+1d culture
AATGGCATCA
(
4
)
AGTAAATATT
GCCTCTGCAT (
2
)
11.8
0.0118
3T3 fibroblasts
AATGGCATCA
(
4
)
GCCTCTGCAT (
2
)
14
0.014
E15 cortex
GCCTCTGCAT (
2
)
39.6
0.0396
P1 cortex
GCCTCTGCAT (
2
)
18.2
0.0182
Hypothalamus
GCCTCTGCAT (
2
)
10.9
0.0109
E12.5 retina
ATTTTTGTGT
GCCTCTGCAT (
2
)
13.2
0.0132
E14.5 retina
AATGGCATCA
(
4
)
ATTTTTGTGT
GCCTCTGCAT (
2
)
18.2
0.0182
E16.5 retina
GCCTCTGCAT (
2
)
GTAAACTACT
18.1
0.0181
E18.5 retina
GCCTCTGCAT (
2
)
9.1
0.0091
P0.5 retina
GCCTCTGCAT (
2
)
23.6
0.0236
P2.5 retina
GCCTCTGCAT (
2
)
31.7
0.0317
P4.5 retina
GCCTCTGCAT (
2
)
19.8
0.0198
P6.5 retina
AGTAAATATT
GCCTCTGCAT (
2
)
23.4
0.0234
P10.5 crx- retina
AGTAAATATT
GCCTCTGCAT (
2
)
29.8
0.0298
P10.5 crx+ retina
AGTAAATATT
GCCTCTGCAT (
2
)
34.6
0.0346
Adult retinal
ATTTTTGTGT
GCCTCTGCAT (
2
)
37
0.037
ONL
AATGGCATCA
(
4
)
ATTTTTGTGT
GCCTCTGCAT (
2
)
21
0.021
