| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GGCCGCCGCC (2)
| 6.5 | 0.0065 |
| Cb medulloblastoma | GCGTAAAAGA (3) GGGCTGCCCA
| 16.1 | 0.0161 |
| P8 GC+1d culture | GCGTAAAAGA (3) GCTTAAAAGA (2)
| 4.5 | 0.0045 |
| P8 GC+SHH+1d culture | AAAATTTCTT (2) GCGTAAAAGA (3)
| 5.9 | 0.0059 |
| 3T3 fibroblasts | GGGCTGCCCA
| 3.5 | 0.0035 |
| Hypothalamus | AAAATTTCTT (2) AGAAAACCAA (2) GCGTAAAAGA (3)
| 14.4 | 0.0144 |
| E12.5 retina | GCGTAAAAGA (3) GGCCGCCGCC (2)
| 3.8 | 0.0038 |
| E14.5 retina | GCGTAAAAGA (3)
| 1.8 | 0.0018 |
| E16.5 retina | GCGTAAAAGA (3)
| 10.9 | 0.0109 |
| E18.5 retina | AAAATTTCTT (2)
| 1.8 | 0.0018 |
| P0.5 retina | GGGCTGCCCA
| 2 | 0.002 |
| P2.5 retina | GCGTAAAAGA (3) GCTTAAAAGA (2)
| 3.6 | 0.0036 |
| P4.5 retina | AAAATTTCTT (2) GCTTAAAAGA (2)
| 4 | 0.004 |
| P6.5 retina | AAAATTTCTT (2) AAGCGGGAGT (4) GCGTAAAAGA (3) GCTTAAAAGA (2)
| 11.7 | 0.0117 |
| P10.5 crx- retina | GCGTAAAAGA (3) GCTTAAAAGA (2)
| 22.3 | 0.0223 |
| P10.5 crx+ retina | GCGTAAAAGA (3) GGGCTGCCAC (3) GGGCTGCCCA
| 17.3 | 0.0173 |
| Adult retinal | GCTTAAAAGA (2) GGGCTGCCCA
| 3.8 | 0.0038 |
| ONL | AAAATTTCTT (2) AGAAAACCAA (2) GCGTAAAAGA (3) GCTTAAAAGA (2) GGGCTGCCAC (3)
| 15.2 | 0.0152 |