| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGGTTGAAGT (2) GCTGGAATGA
| 8.1 | 0.0081 |
| Cb medulloblastoma | AGGTTGAAGT (2) TGTTTTGCAC
| 6.9 | 0.0069 |
| P8 GC+1d culture | AGGTTGAAGT (2) GCTGGAATGA TTTTGCAGAC (2)
| 6.8 | 0.0068 |
| P8 GC+SHH+1d culture | AGGTTGAAGT (2) GCTGGAATGA TTTTGCAGAC (2)
| 6.9 | 0.0069 |
| 3T3 fibroblasts | GCTGGAATGA
| 14 | 0.014 |
| E15 cortex | GCTGGAATGA
| 4.9 | 0.0049 |
| P1 cortex | AGGTTGAAGT (2) GCTGGAATGA TGTTTTGCAC
| 22.6 | 0.0226 |
| Hypothalamus | GCTGGAATGA
| 1.8 | 0.0018 |
| E12.5 retina | ACAGAGCTGA (2) AGGTTGAAGT (2) GCTGGAATGA TGTTTTGCAC
| 15.1 | 0.0151 |
| E14.5 retina | AGGTTGAAGT (2) TGTTTTGCAC
| 10.9 | 0.0109 |
| E16.5 retina | AGGTTGAAGT (2) ATGCAAGGAC GCTGGAATGA
| 10.8 | 0.0108 |
| E18.5 retina | AGGTTGAAGT (2) GCTGGAATGA TTTTGCAGAC (2)
| 9.1 | 0.0091 |
| P0.5 retina | ATGCAAGGAC GCTGGAATGA
| 11.8 | 0.0118 |
| P2.5 retina | AGGTTGAAGT (2) GCTGGAATGA TGTTTTGCAC
| 14.1 | 0.0141 |
| P4.5 retina | AGGTTGAAGT (2) GCTGGAATGA
| 4 | 0.004 |
| P6.5 retina | GCTGGAATGA TGTTTTGCAC
| 3.4 | 0.0034 |
| P10.5 crx- retina | AGGTTGAAGT (2) GCTGGAATGA
| 7.5 | 0.0075 |
| P10.5 crx+ retina | AGGTTGAAGT (2) GCTGGAATGA TGTTTTGCAC
| 11.5 | 0.0115 |
| Adult retinal | ATGCAAGGAC GCTGGAATGA
| 9.3 | 0.0093 |
| ONL | GCTGGAATGA TGTTTTGCAC
| 3.8 | 0.0038 |