| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAATAAATGT (3)
| 11.4 | 0.0114 |
| Cb medulloblastoma | AAATAAATGT (3) TATTTGTTAT
| 11.5 | 0.0115 |
| P8 GC+1d culture | AAATAAATGT (3) AAATTTAAAA (2) CCCTGCTACT (2)
| 10.2 | 0.0102 |
| P8 GC+SHH+1d culture | AAATAAATGT (3) GGGGGGAAAG TATTTGTTAT
| 12.9 | 0.0129 |
| 3T3 fibroblasts | GGGGGGAAAG
| 3.5 | 0.0035 |
| E15 cortex | GGGGGGAAAG
| 9.9 | 0.0099 |
| P1 cortex | GATGTGGTGG (2)
| 4.5 | 0.0045 |
| Hypothalamus | AAATAAATGT (3) CCCTGCTACT (2)
| 27.1 | 0.0271 |
| E12.5 retina | AAATAAATGT (3) GGGGGGAAAG
| 7.5 | 0.0075 |
| E14.5 retina | AAATAAATGT (3) GATGTGGTGG (2) GGGGGGAAAG
| 9.1 | 0.0091 |
| E16.5 retina | AAATAAATGT (3) TATTTGTTAT
| 10.9 | 0.0109 |
| E18.5 retina | AAATAAATGT (3) GGGGGGAAAG TATTTGTTAT
| 16.3 | 0.0163 |
| P2.5 retina | AAATAAATGT (3) GGGGGGAAAG
| 3.6 | 0.0036 |
| P4.5 retina | AAATAAATGT (3) GATGTGGTGG (2)
| 6 | 0.006 |
| P6.5 retina | AAATAAATGT (3) GGGGGGAAAG TATTTGTTAT
| 13.3 | 0.0133 |
| P10.5 crx- retina | AAATAAATGT (3) AAATTTAAAA (2) TATTTGTTAT
| 7.5 | 0.0075 |
| P10.5 crx+ retina | AAATAAATGT (3) GGGGGGAAAG
| 9.6 | 0.0096 |
| Adult retinal | AAATAAATGT (3) CCCTGCTACT (2)
| 5.6 | 0.0056 |
| ONL | AAATAAATGT (3) AAATTTAAAA (2)
| 9.5 | 0.0095 |