Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4911	C230079E05Rik	RIKEN cDNA C230079E05 gene	15		320889
Mm.4911	Cntn1	contactin 1	15	15 55.1 cM	12805
Gene Ontology	cell adhesion | DNA binding | DNA methylation | extracellular space | N-methyltransferase activity | plasma membrane | protein binding
Human Homolog	CNTN1[contactin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCTTCCCTT CTTTAAGATG (2) GAGTCAGCAA (2) 19.6 0.0196 Cb medulloblastoma ATATTTTGAG (2) CCTGCCTTTT (3) CTGCTGGTAC (2) CTTTAAGATG (2) TGATACATTG (2) 18.4 0.0184 P8 GC+1d culture ATATTTTGAG (2) CCCTTCCCTT CTTTAAGATG (2) GAGTCAGCAA (2) 28.4 0.0284 P8 GC+SHH+1d culture ATATTTTGAG (2) CCCTTCCCTT CCTGCCTTTT (3) CTTTAAGATG (2) GAGTCAGCAA (2) 29.3 0.0293 3T3 fibroblasts CCCTTCCCTT GAGTCAGCAA (2) 21 0.021 E15 cortex CCCTTCCCTT GAGTCAGCAA (2) 34.6 0.0346 P1 cortex CCCTTCCCTT CTTTAAGATG (2) 22.7 0.0227 Hypothalamus ATATTTTGAG (2) CCCTTCCCTT CTGCTGGTAC (2) CTTTAAGATG (2) TGATACATTG (2) 12.6 0.0126 E12.5 retina CCCTTCCCTT GAGTCAGCAA (2) 24.4 0.0244 E14.5 retina ATATTTTGAG (2) CCCTTCCCTT 12.7 0.0127 E16.5 retina ATATTTTGAG (2) CCCTTCCCTT GAGTCAGCAA (2) 47.1 0.0471 E18.5 retina ATATTTTGAG (2) CCCTTCCCTT GAGTCAGCAA (2) TGATAGATTG (2) 29.1 0.0291 P0.5 retina CCCTTCCCTT GAGTCAGCAA (2) 43.2 0.0432 P2.5 retina ATATTTTGAG (2) CCCTTCCCTT CCTGCCTTTT (3) CTTTAAGATG (2) GAGTCAGCAA (2) 30 0.03 P4.5 retina ATATTTTGAG (2) CCCTTCCCTT GAGTCAGCAA (2) 9.9 0.0099 P6.5 retina ATATTTTGAG (2) CCCTTCCCTT CTTTAAGATG (2) TGATACATTG (2) 23.4 0.0234 P10.5 crx- retina ATATTTTGAG (2) CCCTTCCCTT CCTGCCTTTT (3) CTTTAAGATG (2) TGATAGATTG (2) 16.8 0.0168 P10.5 crx+ retina ATATTTTGAG (2) CCCTTCCCTT CTTTAAGATG (2) GAGTCAGCAA (2) 13.3 0.0133 Adult retinal CCCTTCCCTT CTGCTGGTAC (2) CTTTAAGATG (2) TGATAGATTG (2) 16.8 0.0168 ONL CTTTAAGATG (2) GAGTCAGCAA (2) 5.7 0.0057