Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.565	Sptlc2	serine palmitoyltransferase, long chain base subunit 2	12		20773
Gene Ontology	acyltransferase activity | biosynthesis | endoplasmic reticulum | integral to membrane | metabolism | serine C-palmitoyltransferase activity | transaminase activity | transferase activity
Human Homolog	SPTLC2[serine palmitoyltransferase, long chain base subunit 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 65 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGCTAAAC (4) TAAGAATAAA (3) TGAAAGACAT 6.5 0.0065 Cb medulloblastoma CACTCTGAAA CAGGCTAAAC (4) GGGGCCACTT (2) TAAGAATAAA (3) 16.1 0.0161 P8 GC+1d culture CTGGTTGCTG (2) TAAGAATAAA (3) TGAAAGACAT 9.2 0.0092 P8 GC+SHH+1d culture CTGGTTGCTG (2) TAAGAATAAA (3) TGAAAGACAT 9.4 0.0094 3T3 fibroblasts CTGGTTGCTG (2) GGGGCCACTT (2) 7 0.007 E15 cortex GGGGCCACTT (2) 9.9 0.0099 P1 cortex CAGGCTAAAC (4) GGGGCCACTT (2) TAAGAATAAA (3) TTAAGAAATA (2) 18 0.018 Hypothalamus CTGGTTGCTG (2) GAAATCCCTT GGGCAGGATG (2) GGGGCCACTT (2) TAAGAATAAA (3) TGAAAGACAT TTAAGAAATA (2) 30.7 0.0307 E12.5 retina TAAGAATAAA (3) 1.9 0.0019 E14.5 retina CAGGCTAAAC (4) CTGGTTGCTG (2) TTAAGAAATA (2) 5.4 0.0054 E16.5 retina CTGGTTGCTG (2) TGAAAGACAT 5.4 0.0054 E18.5 retina CACTCTGAAA CAGGCTAAAC (4) GGGGCCACTT (2) TAAGAATAAA (3) TGAAAGACAT TTAAGAAATA (2) 12.6 0.0126 P0.5 retina CACTCTGAAA CTGGTTGCTG (2) GAAATCCCTT GGGGCCACTT (2) TTAAGAAATA (2) 11.9 0.0119 P2.5 retina GGGGCCACTT (2) TGAAAGACAT 3.6 0.0036 P4.5 retina GGGGCCACTT (2) TAAGAATAAA (3) TGAAAGACAT 12 0.012 P6.5 retina GAAATCCCTT GGGCAGGATG (2) TAAGAATAAA (3) 6.7 0.0067 P10.5 crx- retina CTGGTTGCTG (2) GGGGCCACTT (2) TAAGAATAAA (3) TGAAAGACAT 20.4 0.0204 P10.5 crx+ retina CACTCTGAAA CTGGTTGCTG (2) GGGCAGGATG (2) GGGGCCACTT (2) TAAGAATAAA (3) 13.3 0.0133 Adult retinal GGGGCCACTT (2) TGAAAGACAT 13 0.013 ONL GGGGCCACTT (2) TAAGAATAAA (3) 5.7 0.0057