| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CTGTGTGGCC (2) TTCTGTGTGG
| 4.9 | 0.0049 |
| Cb medulloblastoma | CTGTGTGGCC (2) TTCTGTGTGG
| 20.8 | 0.0208 |
| P8 GC+1d culture | CTGTGTGGCC (2) TGTTCCCTCA TTCTGTGTGG
| 11.4 | 0.0114 |
| P8 GC+SHH+1d culture | CTGTGTGGCC (2) GAGGGGCCGC (3) TGGGTCCCAA TGTTCCCTCA TTCTGTGTGG
| 10.6 | 0.0106 |
| 3T3 fibroblasts | CAGGCAGAAA CCGCCTGCAA (2) CTGTGTGGCC (2) GAGGGGCCGC (3) TTCTGTGTGG
| 112.2 | 0.1122 |
| E15 cortex | CCGCCTGCAA (2) GAGGGGCCGC (3)
| 14.8 | 0.0148 |
| P1 cortex | TGGGTCCCAA TTCTGTGTGG
| 9 | 0.009 |
| Hypothalamus | TTCTGTGTGG
| 1.8 | 0.0018 |
| E12.5 retina | CCGCCTGCAA (2) TTCTGTGTGG
| 5.7 | 0.0057 |
| E14.5 retina | CAGGCAGAAA CCGCCTGCAA (2) CTGGGGGGGG GAGGGGCCGC (3) TAAATATTTA (2) TCCCTCAACT (4) TTCTGTGTGG
| 41.8 | 0.0418 |
| E16.5 retina | CCGCCTGCAA (2) CTGTGTGGCC (2) GAGGGGCCGC (3) TAAATATTTA (2) TCCCTCAACT (4) TGTTCCCTCA TTCTGTGTGG
| 57.8 | 0.0578 |
| E18.5 retina | CCGCCTGCAA (2) GAGGGGCCGC (3) TAAATATTTA (2) TTCTGTGTGG
| 20 | 0.02 |
| P0.5 retina | CAGGCAGAAA CCGCCTGCAA (2) CTGTGTGGCC (2) GAGGGGCCGC (3) TTCTGTGTGG
| 21.7 | 0.0217 |
| P2.5 retina | CAGGCAGAAA CCGCCTGCAA (2) CTGGGGGGGG CTGTGTGGCC (2) GAGGGGCCGC (3) TAAATATTTA (2) TCCCTCAACT (4) TGGGTCCCAA TTCTGTGTGG
| 82.9 | 0.0829 |
| P4.5 retina | CCGCCTGCAA (2) CTGTGTGGCC (2) GAGGGGCCGC (3) TAAATATTTA (2) TTCTGTGTGG
| 45.6 | 0.0456 |
| P6.5 retina | CCGCCTGCAA (2) CTGGGGGGGG CTGTGTGGCC (2) GAGGGGCCGC (3) TTCTGTGTGG
| 20.1 | 0.0201 |
| P10.5 crx- retina | CCGCCTGCAA (2) CTGTGTGGCC (2) GAGGGGCCGC (3) TGTTCCCTCA TTCTGTGTGG
| 22.3 | 0.0223 |
| P10.5 crx+ retina | CCGCCTGCAA (2) CTGTGTGGCC (2) TTCTGTGTGG
| 13.4 | 0.0134 |
| Adult retinal | CAGGCAGAAA CCGCCTGCAA (2) CTGGGGGGGG GAGGGGCCGC (3) TCCCTCAACT (4)
| 15 | 0.015 |
| ONL | CAGGCAGAAA CCGCCTGCAA (2) TGGGTCCCAA
| 53.6 | 0.0536 |