| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAATAAAA (3) AACAATGCCA GCCAAGCCAG (2) TCAAACTGTG TCAAACTTGG
| 161.6 | 0.1616 |
| Cb medulloblastoma | AAAAATAAAA (3) TCAAACTGTG TCAAACTTGG
| 34.7 | 0.0347 |
| P8 GC+1d culture | AAAAATAAAA (3) ACACACTCCA ACTGTTGAGT ATGAGAATGG (2) CCCCGTCATT TCAAACTGTG TCAAACTTGG
| 128.8 | 0.1288 |
| P8 GC+SHH+1d culture | AAAAATAAAA (3) ACACACTCCA ATGAGAATGG (2) GCAGCCATCT GCCAAGCCAG (2) GGTCAAAAAA TCAAACTGTG TCAAACTTGG
| 158.3 | 0.1583 |
| 3T3 fibroblasts | GCCAAGCCAG (2) TCAAACTTGG
| 14 | 0.014 |
| E15 cortex | ACTGTTGAGT GCCAAGCCAG (2) GGTCAAAAAA TCAAACTGTG TCAAACTTGG
| 69.1 | 0.0691 |
| P1 cortex | AAAAATAAAA (3) CCCCGTCATT TCAAACTTGG
| 68.1 | 0.0681 |
| Hypothalamus | AAAAATAAAA (3) GCAGCCATCT TCAAACTTGG
| 79.7 | 0.0797 |
| E12.5 retina | AAAAATAAAA (3) ACACACTCCA ACTGTTGAGT TCAAACTGTG TCAAACTTGG
| 103.3 | 0.1033 |
| E14.5 retina | AAAAATAAAA (3) AACAATGCCA ACTGTTGAGT CCCCGTCATT GCAGCCATCT GCCAAGCCAG (2) GGTCAAAAAA TCAAACTGTG TCAAACTTGG
| 114.7 | 0.1147 |
| E16.5 retina | AAAAATAAAA (3) AACAATGCCA ACACACTCCA GCAGCCATCT GCCAAGCCAG (2) TCAAACTGTG TCAAACTTGG
| 128.5 | 0.1285 |
| E18.5 retina | AAAAATAAAA (3) GCAGCCATCT GGTCAAAAAA TCAAACTGTG TCAAACTTGG
| 105.5 | 0.1055 |
| P0.5 retina | AAAAATAAAA (3) AACAATGCCA CCCCGTCATT GCAGCCATCT GCCAAGCCAG (2) TCAAACTGTG TCAAACTTGG
| 51.1 | 0.0511 |
| P2.5 retina | AAAAATAAAA (3) TCAAACTGTG TCAAACTTGG
| 77.5 | 0.0775 |
| P4.5 retina | AAAAATAAAA (3) CCCCGTCATT GGTCAAAAAA TCAAACTGTG TCAAACTTGG
| 118.9 | 0.1189 |
| P6.5 retina | AAAAATAAAA (3) GCCAAGCCAG (2) TCAAACTGTG TCAAACTTGG
| 75.1 | 0.0751 |
| P10.5 crx- retina | AAAAATAAAA (3) ATGAGAATGG (2) GCCAAGCCAG (2) TCAAACTGTG TCAAACTTGG
| 68.8 | 0.0688 |
| P10.5 crx+ retina | AAAAATAAAA (3) ACTGTTGAGT GCAGCCATCT TCAAACTGTG TCAAACTTGG
| 42.2 | 0.0422 |
| Adult retinal | AAAAATAAAA (3) GCAGCCATCT TCAAACTGTG TCAAACTTGG
| 11.3 | 0.0113 |
| ONL | TCAAACTTGG
| 5.7 | 0.0057 |