Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7723	Pabpn1	poly(A) binding protein, nuclear 1	14	14 19.5 cM	54196
Gene Ontology	mRNA polyadenylation | mRNA processing | nucleic acid binding | nucleus | poly(A) binding | RNA binding
Human Homolog	PABPN1[poly(A) binding protein, nuclear 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 94 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTCGCTCT GCTGTGGTTA (2) GTATTCCCCT GTCAAGCCCC 34.2 0.0342 Cb medulloblastoma ATGTCGCTCT GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 46.1 0.0461 P8 GC+1d culture GACACATCTC GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 12.5 0.0125 P8 GC+SHH+1d culture ATGTCGCTCT GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 16.4 0.0164 3T3 fibroblasts GGCTGGTGGG (2) GGGAGGGTCT GTATTCCCCT 21 0.021 E15 cortex ATGTCGCTCT GTATTCCCCT GTCAAGCCCC 24.7 0.0247 P1 cortex GGCTGGTGGG (2) GTATTCCCCT 54.5 0.0545 Hypothalamus ATGTCGCTCT GACACATCTC GCTGTGGTTA (2) GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 47.1 0.0471 E12.5 retina GACACATCTC GCTGTGGTTA (2) GTATTCCCCT GTCAAGCCCC GTTTCCCTTC (2) 39.5 0.0395 E14.5 retina ATGTCGCTCT GGCCCGCAAC GGCTGGTGGG (2) GGGAGGGTCT GTATTCCCCT GTTTCCCTTC (2) 49.1 0.0491 E16.5 retina ATGTCGCTCT GCTGTGGTTA (2) GGCCCGCAAC GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 68.8 0.0688 E18.5 retina ATGTCGCTCT GGCTGGTGGG (2) GTATTCCCCT GTCAAGCCCC GTTTCCCTTC (2) 52.7 0.0527 P0.5 retina ATGTCGCTCT GCTGTGGTTA (2) GTATTCCCCT GTTTCCCTTC (2) 27.5 0.0275 P2.5 retina ATGTCGCTCT GACACATCTC GCTGTGGTTA (2) GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 47.6 0.0476 P4.5 retina ATGTCGCTCT GACACATCTC GCTGTGGTTA (2) GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 49.6 0.0496 P6.5 retina ATGTCGCTCT GACACATCTC GCTGTGGTTA (2) GGCTGGTGGG (2) GGGAGGGTCT GTATTCCCCT GTTTCCCTTC (2) 40.2 0.0402 P10.5 crx- retina ATGTCGCTCT GGCTGGTGGG (2) GTATTCCCCT 24.2 0.0242 P10.5 crx+ retina GACACATCTC GCTGGTGGTC GCTGTGGTTA (2) GGCCCGCAAC GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 59.6 0.0596 Adult retinal ATGTCGCTCT GACACATCTC GGCTGGTGGG (2) GTATTCCCCT GTTTCCCTTC (2) 20.5 0.0205 ONL GACACATCTC GCTGGTGGTC GCTGTGGTTA (2) GTATTCCCCT 26.7 0.0267