| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CTAAAAAAAA (2) GCAAGCTGTT (3) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 89.7 | 0.0897 |
| Cb medulloblastoma | CCTACTGAGG CTAAAAAAAA (2) GCAACTGTCA (2) GCAAGCTGTT (3) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 263.5 | 0.2635 |
| P8 GC+1d culture | AACTGCCAGC (3) CTAAAAAAAA (2) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 82.1 | 0.0821 |
| P8 GC+SHH+1d culture | AACTGCCAGC (3) CTAAAAAAAA (2) GCCACCAGGC TGGTTGCTGG
| 133.5 | 0.1335 |
| 3T3 fibroblasts | GCCACCAGGC TGGTTGCTGG
| 227.8 | 0.2278 |
| E15 cortex | AACTGCCAGC (3) CTAAAAAAAA (2) TGGACCTTTT (2) TGGTTGCTGG
| 306.7 | 0.3067 |
| P1 cortex | CTAAAAAAAA (2) TGGACCTTTT (2) TGGTTGCTGG
| 95.4 | 0.0954 |
| Hypothalamus | ATGACAGTTG CTAAAAAAAA (2) GCAACTGTCA (2) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 434.7 | 0.4347 |
| E12.5 retina | CTAAAAAAAA (2) GCCACCAGGC TATACCTCCC (2) TGGTTGCTGG
| 172.8 | 0.1728 |
| E14.5 retina | CTAAAAAAAA (2) GCCACCAGGC TATACCTCCC (2) TGGTTGCTGG
| 962 | 0.962 |
| E16.5 retina | CTAAAAAAAA (2) GCCACCAGGC TATACCTCCC (2) TGGTTGCTGG
| 786 | 0.786 |
| E18.5 retina | CTAAAAAAAA (2) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 278.2 | 0.2782 |
| P0.5 retina | AACTGCCAGC (3) ATGACAGTTG CCTACTGAGG CTAAAAAAAA (2) GCCACCAGGC TGGTTGCTGG
| 212.1 | 0.2121 |
| P2.5 retina | CTAAAAAAAA (2) TGGACCTTTT (2) TGGTTGCTGG
| 183 | 0.183 |
| P4.5 retina | AACTGCCAGC (3) CTAAAAAAAA (2) GCAACTGTCA (2) GCCACCAGGC TATACCTCCC (2) TGGACCTTTT (2) TGGTTGCTGG
| 196.2 | 0.1962 |
| P6.5 retina | ATGACAGTTG CTAAAAAAAA (2) GCAAGCTGTT (3) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 193.4 | 0.1934 |
| P10.5 crx- retina | CTAAAAAAAA (2) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 302.8 | 0.3028 |
| P10.5 crx+ retina | CTAAAAAAAA (2) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 125 | 0.125 |
| Adult retinal | CCTACTGAGG CTAAAAAAAA (2) GCCACCAGGC TGGACCTTTT (2) TGGTTGCTGG
| 274.2 | 0.2742 |
| ONL | CTAAAAAAAA (2) TGGACCTTTT (2) TGGTTGCTGG
| 413.7 | 0.4137 |