| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AAACCACACA (5) AGTACATTCA (2) AGTACATTTC (2) CAAAAAAAAA (2) CGGGCACCTA TCAAATAGTG
| 267.5 | 0.2675 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAGTAAAAAA AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA
| 918 | 0.918 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAGTAAAAAA AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA
| 248.8 | 0.2488 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAGTAAAAAA AGTACAAAAA (3) AGTACATTCA (2) AGTACATTTC (2) CAAAAAAAAA (2) CGGGCACCTA
| 350.2 | 0.3502 |
| 3T3 fibroblasts | AAAAAAAAAA (2) AGTACATTCA (2) CGGGCACCTA
| 38.5 | 0.0385 |
| E15 cortex | AAAAAAAAAA (2) CAAAAAAAAA (2) CGGGCACCTA
| 252.3 | 0.2523 |
| P1 cortex | AAAAAAAAAA (2) CAAAAAAAAA (2) CGGGCACCTA
| 272.6 | 0.2726 |
| Hypothalamus | AAAAAAAAAA (2) AAGTAAAAAA AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA TCAAATAGTG
| 182.9 | 0.1829 |
| E12.5 retina | AAAAAAAAAA (2) AAACCACACA (5) AGTACATTCA (2) CAAAAAAAAA (2)
| 172.7 | 0.1727 |
| E14.5 retina | AAAAAAAAAA (2) AAACCACACA (5) AGTACATTCA (2) CAAAAAAAAA (2) TCAAATAGTG
| 109.2 | 0.1092 |
| E16.5 retina | AAAAAAAAAA (2) AAACCACACA (5) AGTACATTCA (2) ATTACGCCAA CAAAAAAAAA (2) CGGGCACCTA TCAAATAGTG TGCCATTTTA
| 67 | 0.067 |
| E18.5 retina | AAAAAAAAAA (2) AAGTAAAAAA AGTACAAAAA (3) AGTACATTCA (2) CAAAAAAAAA (2)
| 432.9 | 0.4329 |
| P0.5 retina | AAAAAAAAAA (2) AGTACATTCA (2) ATTACGCCAA CAAAAAAAAA (2)
| 274.9 | 0.2749 |
| P2.5 retina | AAAAAAAAAA (2) AAGTAAAAAA AGTACATTCA (2) CAAAAAAAAA (2) TCAAATAGTG
| 390.8 | 0.3908 |
| P4.5 retina | AAAAAAAAAA (2) AAACCACACA (5) AGTACATTCA (2) AGTACATTTC (2) CAAAAAAAAA (2) CGGGCACCTA
| 338.8 | 0.3388 |
| P6.5 retina | AAAAAAAAAA (2) AAACCACACA (5) AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA
| 316.9 | 0.3169 |
| P10.5 crx- retina | AAAAAAAAAA (2) AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA
| 65.1 | 0.0651 |
| P10.5 crx+ retina | AAAAAAAAAA (2) AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA TCAAATAGTG TGCCATTTTA
| 140.2 | 0.1402 |
| Adult retinal | AAAAAAAAAA (2) ATTACGCCAA CAAAAAAAAA (2) CGGGCACCTA
| 83.4 | 0.0834 |
| ONL | AAAAAAAAAA (2) AGTACATTCA (2) CAAAAAAAAA (2) CGGGCACCTA
| 124.4 | 0.1244 |