| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AATTCATTTT
| 1.6 | 0.0016 |
| Cb medulloblastoma | AAAAAAAAAT (2) AATTCATTTT TTAAATGTTG (2)
| 9.2 | 0.0092 |
| P8 GC+1d culture | AAAAAAAAAT (2)
| 3.4 | 0.0034 |
| P8 GC+SHH+1d culture | AAAAAAAAAT (2) AAAAATAAAT (2)
| 7.1 | 0.0071 |
| E15 cortex | AAAAATGAGA (2) AAAATGAGAA
| 9.8 | 0.0098 |
| P1 cortex | AAAAAAAAAT (2)
| 9.1 | 0.0091 |
| Hypothalamus | AAAATGAGAA TTAAATGTTG (2)
| 3.6 | 0.0036 |
| E14.5 retina | AAAAAAAAAT (2) AAAAATGAGA (2) AATTCATTTT GACACACTTG
| 34.6 | 0.0346 |
| E16.5 retina | AAAAAAAAAT (2) AAAATGAGAA GACACACTTG
| 5.4 | 0.0054 |
| E18.5 retina | AAAAAAAAAT (2) AAAAATAAAT (2) GACACACTTG
| 10.9 | 0.0109 |
| P0.5 retina | AAAAAAAAAT (2)
| 3.9 | 0.0039 |
| P2.5 retina | AAAAAAAAAT (2) TTAAATGTTG (2)
| 5.3 | 0.0053 |
| P4.5 retina | AAAAAAAAAT (2)
| 4 | 0.004 |
| P6.5 retina | AAAAATAAAT (2) AAAATGAGAA GGTGACAGAA (2)
| 8.3 | 0.0083 |
| P10.5 crx- retina | AAAAAAAAAT (2) AAAAATAAAT (2) TTAAATGTTG (2)
| 7.5 | 0.0075 |
| P10.5 crx+ retina | GGTGACAGAA (2)
| 1.9 | 0.0019 |
| Adult retinal | AAAAAAAAAT (2)
| 1.9 | 0.0019 |
| ONL | AAAAAAAAAT (2) AAAAATAAAT (2) AAAAATGAGA (2) GGTGACAGAA (2)
| 15.2 | 0.0152 |