| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CCTGTCATCC (2) TGGTTGCTGG
| 70.1 | 0.0701 |
| Cb medulloblastoma | TGGTTGCTGG
| 113.3 | 0.1133 |
| P8 GC+1d culture | CCTGTCATCC (2) GAGCTTGGTT TGGTTGCTGG
| 59.3 | 0.0593 |
| P8 GC+SHH+1d culture | CCTGTCATCC (2) CTGACTGTGA (2) TGGTTGCTGG
| 93.6 | 0.0936 |
| 3T3 fibroblasts | CTGACTGTGA (2) TGGTTGCTGG
| 224.3 | 0.2243 |
| E15 cortex | CCTTTAATGC TGGTTGCTGG
| 282 | 0.282 |
| P1 cortex | CCTTTAATGC TGGTTGCTGG
| 90.9 | 0.0909 |
| Hypothalamus | GGTTGCTGGG (3) TGGTTGCTGG
| 355 | 0.355 |
| E12.5 retina | CCTTTAATGC CTGACTGTGA (2) TGGTTGCTGG
| 161.5 | 0.1615 |
| E14.5 retina | CCTGTCATCC (2) CCTTTAATGC TGGTTGCTGG
| 940.1 | 0.9401 |
| E16.5 retina | CTGACTGTGA (2) TGGTTGCTGG
| 769.7 | 0.7697 |
| E18.5 retina | TGGTTGCTGG
| 252.8 | 0.2528 |
| P0.5 retina | TGGTTGCTGG
| 190.4 | 0.1904 |
| P2.5 retina | CCTGTCATCC (2) TGGTTGCTGG
| 167.2 | 0.1672 |
| P4.5 retina | CTGACTGTGA (2) TGGTTGCTGG
| 152.6 | 0.1526 |
| P6.5 retina | CTGACTGTGA (2) GAGCTTGGTT TGGTTGCTGG
| 161.7 | 0.1617 |
| P10.5 crx- retina | CCTGTCATCC (2) GAGCTTGGTT TGGTTGCTGG
| 289.8 | 0.2898 |
| P10.5 crx+ retina | CCTGTCATCC (2) CCTTTAATGC TGGTTGCTGG
| 109.6 | 0.1096 |
| Adult retinal | GAGCTTGGTT GGTTGCTGGG (3) TGGTTGCTGG
| 218.6 | 0.2186 |
| ONL | TGGTTGCTGG
| 398.4 | 0.3984 |