Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.99113	C530040J15Rik	RIKEN cDNA C530040J15 gene	6		319356
Mm.99113	Smarcad1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1`	6	6 29.69 cM	13990
Gene Ontology	ATP binding | ATP dependent helicase activity | DNA binding | helicase activity | hydrolase activity | nucleic acid binding | nucleus
Human Homolog	SMARCAD1[SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 36 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAATAGGTC (2) TGGCTGGAAT (2) TGGTTGCTGA (3) 8.2 0.0082 Cb medulloblastoma TGGTTGCTGA (3) 2.3 0.0023 P8 GC+1d culture AAAATAGGTC (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAATAGGTC (2) CTTCCCCCAG (6) TGGTTGCTGA (3) 7 0.007 3T3 fibroblasts TGGTTGCTGA (3) 7 0.007 E15 cortex TGGTTGCTGA (3) 4.9 0.0049 Hypothalamus TGGTTGCTGA (3) 1.8 0.0018 E12.5 retina AAAATAGGTC (2) TGGTTGCTGA (3) 3.8 0.0038 E14.5 retina AAAATAGGTC (2) CTTCCCCCAG (6) TGGTTGCTGA (3) 25.5 0.0255 E16.5 retina CTTCCCCCAG (6) TGGTTGCTGA (3) 21.7 0.0217 E18.5 retina TGGTTGCTGA (3) 1.8 0.0018 P0.5 retina TGGTTGCTGA (3) 2 0.002 P2.5 retina AAAATAGGTC (2) TGGTTGCTGA (3) 3.6 0.0036 P4.5 retina TGGCTGGAAT (2) TGGTTGCTGA (3) 7.9 0.0079 P6.5 retina AAAATAGGTC (2) CTTCCCCCAG (6) TGGCTGGAAT (2) TGGTTGCTGA (3) 13.4 0.0134 P10.5 crx- retina CTGAATCACA TGGCTGGAAT (2) TGGTTGCTGA (3) 5.7 0.0057 P10.5 crx+ retina TGGTTGCTGA (3) 3.8 0.0038 Adult retinal CTGAATCACA CTTCCCCCAG (6) TGGTTGCTGA (3) 7.5 0.0075 ONL TGGTTGCTGA (3) 11.5 0.0115