| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CTGGCCAGGA (3) GCCCAGATAC (2) GGAGGTCCCT (3)
| 8.1 | 0.0081 |
| Cb medulloblastoma | CTGGCCAGGA (3) GCCCTGTCTG (2) GGAGGTCCCT (3)
| 9.2 | 0.0092 |
| P8 GC+1d culture | CTGGCCAGGA (3) GCCCAGATAC (2) GCCCTGTCTG (2) GGAGGTCCCT (3) GGCAGGGTGG (2) TCTGTACTGG (2)
| 13.5 | 0.0135 |
| P8 GC+SHH+1d culture | CTGGCCAGGA (3) GCCCTGTCTG (2) GGAGGTCCCT (3) GGCAGGGTGG (2)
| 5.9 | 0.0059 |
| 3T3 fibroblasts | GGAGGTCCCT (3)
| 3.5 | 0.0035 |
| E15 cortex | CTGGCCAGGA (3) GGAGGTCCCT (3)
| 14.8 | 0.0148 |
| P1 cortex | GGAGGTCCCT (3)
| 9.1 | 0.0091 |
| Hypothalamus | GGAGGTCCCT (3) GGCAGGGTGG (2)
| 5.4 | 0.0054 |
| E12.5 retina | CTGGCCAGGA (3) GGAGGTCCCT (3)
| 5.7 | 0.0057 |
| E14.5 retina | CTGGCCAGGA (3) GGAGGTCCCT (3)
| 5.4 | 0.0054 |
| E16.5 retina | CTGGCCAGGA (3) GGAGGTCCCT (3)
| 12.6 | 0.0126 |
| E18.5 retina | AACATCTGTT (2) CTGGCCAGGA (3) GGAGGTCCCT (3)
| 20 | 0.02 |
| P0.5 retina | GGAGGTCCCT (3)
| 5.9 | 0.0059 |
| P2.5 retina | AACATCTGTT (2) CTGGCCAGGA (3) GGAGGTCCCT (3) GGCAGGGTGG (2)
| 17.7 | 0.0177 |
| P4.5 retina | CTGGCCAGGA (3) GGAGGTCCCT (3)
| 7.9 | 0.0079 |
| P6.5 retina | CTGGCCAGGA (3) GCCCAGATAC (2) GGAGGTCCCT (3)
| 11.7 | 0.0117 |
| P10.5 crx- retina | AACATCTGTT (2) CTGGCCAGGA (3) TCTGTACTGG (2)
| 7.5 | 0.0075 |
| P10.5 crx+ retina | CTGGCCAGGA (3) GCCCAGATAC (2) GGAGGTCCCT (3) GGCAGGGTGG (2)
| 15.4 | 0.0154 |
| Adult retinal | CTGGCCAGGA (3) GCCCAGATAC (2) GGAGGTCCCT (3) TCTGTACTGG (2)
| 13.1 | 0.0131 |
| ONL | CTGGCCAGGA (3) GGAGGTCCCT (3)
| 5.7 | 0.0057 |