| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGAATGTGAG CACTGAGCTC (2) CCCGCTGGTT GAGGCTTTAG GGGCTTTAGA TCCTGAACCC (2)
| 24.5 | 0.0245 |
| Cb medulloblastoma | CACTGAGCTC (2) GAGGCTTTAG TCTCAAAATA TGGGCGCTAA
| 16.1 | 0.0161 |
| P8 GC+1d culture | GGGCTTTAGA TCCTGAACCC (2) TGGGCGCTAA
| 12.5 | 0.0125 |
| P8 GC+SHH+1d culture | CACTGAGCTC (2) GGGCTTTAGA TCCTGAACCC (2)
| 14.1 | 0.0141 |
| 3T3 fibroblasts | CCCGCTGGTT GGGCTTTAGA TGGGCGCTAA
| 14 | 0.014 |
| E15 cortex | CCCGCTGGTT GGGCTTTAGA TCCTGAACCC (2)
| 19.7 | 0.0197 |
| P1 cortex | GGGCTTTAGA TCCTGAACCC (2)
| 31.8 | 0.0318 |
| Hypothalamus | AGAATGTGAG CACTGAGCTC (2) GGGCTTTAGA TCCTGAACCC (2)
| 12.6 | 0.0126 |
| E12.5 retina | AGAATGTGAG CACTGAGCTC (2) GAGACTCAGG GGGCTTTAGA TCCTGAACCC (2) TCTCAAAATA TGGGCGCTAA
| 30.2 | 0.0302 |
| E14.5 retina | GAGACTCAGG GGGCTTTAGA TCCTGAACCC (2) TCTCAAAATA TGGGCGCTAA
| 25.4 | 0.0254 |
| E16.5 retina | AGAATGTGAG CACTGAGCTC (2) TCCTGAACCC (2) TCTCAAAATA
| 19.9 | 0.0199 |
| E18.5 retina | TCCTGAACCC (2)
| 32.7 | 0.0327 |
| P0.5 retina | GGGCTTTAGA TCCTGAACCC (2)
| 19.7 | 0.0197 |
| P2.5 retina | CACTGAGCTC (2) CCCGCTGGTT GGGCTTTAGA TCCTGAACCC (2) TGGGCGCTAA
| 31.7 | 0.0317 |
| P4.5 retina | CACTGAGCTC (2) GAGGCTTTAG GGGCTTTAGA TCCTGAACCC (2)
| 19.8 | 0.0198 |
| P6.5 retina | CACTGAGCTC (2) CCCGCTGGTT GGGCTTTAGA TCCTGAACCC (2)
| 15.1 | 0.0151 |
| P10.5 crx- retina | TCCTGAACCC (2)
| 5.6 | 0.0056 |
| P10.5 crx+ retina | AGAATGTGAG CACTGAGCTC (2) GGGCTTTAGA TCCTGAACCC (2) TGGGCGCTAA
| 17.2 | 0.0172 |
| Adult retinal | CACTGAGCTC (2) CCCGCTGGTT TCCTGAACCC (2) TCTCAAAATA
| 7.6 | 0.0076 |
| ONL | GAGACTCAGG GGGCTTTAGA TCCTGAACCC (2) TGGGCGCTAA
| 11.4 | 0.0114 |