Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.235338	H2-Aa	histocompatibility 2, class II antigen A, alpha	17	17 18.65 cM	14960
Mm.235338	H2-Ea	histocompatibility 2, class II antigen E alpha	17	17 18.7 cM	14968
Gene Ontology	antigen presentation, exogenous antigen | antigen presentation, exogenous antigen via MHC class II | antigen presentation, exogenous peptide antigen | antigen processing, exogenous antigen via MHC class II | defense response | external side of plasma membrane | humoral defense mechanism (sensu Vertebrata) | humoral defense mechanism (sensu Vertebrata) | immune response | integral to membrane | lysosome | membrane | MHC class II receptor activity | plasma membrane | positive regulation of immune response | positive regulation of immune response
Human Homolog	HLA-DRA[major histocompatibility complex, class II, DR alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 25 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAGAGTGAC (2) 3.3 0.0033 Cb medulloblastoma GTGGTCAGGG (2) 2.3 0.0023 P8 GC+1d culture GAAAAAGTGG (2) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAGTGG (2) TCAGAGTGAC (2) 3.5 0.0035 3T3 fibroblasts GAAAAAGTGG (2) 3.5 0.0035 P1 cortex GAAAAAGTGG (2) 9.1 0.0091 Hypothalamus GAAAAAGTGG (2) GTGGTCAGGG (2) 3.6 0.0036 E12.5 retina TGTCAACTCA (2) 1.9 0.0019 E14.5 retina GAAAAAGTGG (2) 12.8 0.0128 E16.5 retina GAAAAAGTGG (2) 1.8 0.0018 E18.5 retina GAAAAAGTGG (2) GTGGTCAGGG (2) 5.4 0.0054 P0.5 retina TGTCAACTCA (2) 3.9 0.0039 P2.5 retina GAAAAAGTGG (2) 3.5 0.0035 P4.5 retina GAAAAAGTGG (2) GTGGTCAGGG (2) 4 0.004 P6.5 retina GAAAAAGTGG (2) 5 0.005 P10.5 crx- retina GAAAAAGTGG (2) 1.9 0.0019 P10.5 crx+ retina GAAAAAGTGG (2) TGTCAACTCA (2) 9.6 0.0096 ONL GAAAAAGTGG (2) GTGGTCAGGG (2) TGTCAACTCA (2) 5.7 0.0057