| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAGATGCGCA (2) CCAGGTGTAG (2) CTCGAGTCTC (3) GCAGCTATCC (3) TAAGGTGGTT
| 57.1 | 0.0571 |
| P8 GC+1d culture | CCAGGTGTAG (2) CTCGAGTCTC (3) GCAGCTATCC (3)
| 19.3 | 0.0193 |
| P8 GC+SHH+1d culture | CTCGAGTCTC (3) GCAGCTATCC (3)
| 37.5 | 0.0375 |
| 3T3 fibroblasts | CTCGAGTCTC (3) GTAACTTGTG (2)
| 178.7 | 0.1787 |
| E15 cortex | CTCGAGTCTC (3)
| 19.8 | 0.0198 |
| P1 cortex | CTCGAGTCTC (3)
| 13.6 | 0.0136 |
| Hypothalamus | AAGATGCGCA (2) CCAGGTGTAG (2) CTCGAGTCTC (3)
| 7.2 | 0.0072 |
| E12.5 retina | AAGATGCGCA (2) CTCGAGTCTC (3) TAAGGTGGTT
| 37.6 | 0.0376 |
| E14.5 retina | CTCGAGTCTC (3) TAAGGTGGTT
| 10.9 | 0.0109 |
| E16.5 retina | AAGATGCGCA (2) CTCGAGTCTC (3) GCAGCTATCC (3) GTAACTTGTG (2)
| 18.1 | 0.0181 |
| E18.5 retina | CTCGAGTCTC (3) GCAGCTATCC (3)
| 9.1 | 0.0091 |
| P0.5 retina | CTCGAGTCTC (3)
| 37.3 | 0.0373 |
| P2.5 retina | CTCGAGTCTC (3) TAAGGTGGTT
| 12.4 | 0.0124 |
| P4.5 retina | AAGATGCGCA (2) CCAGGTGTAG (2) CTCGAGTCTC (3) TAAGGTGGTT
| 8 | 0.008 |
| P6.5 retina | CTCGAGTCTC (3) GCAGCTATCC (3) TAAGGTGGTT
| 21.6 | 0.0216 |
| P10.5 crx- retina | CTCGAGTCTC (3) GTAACTTGTG (2)
| 13 | 0.013 |
| P10.5 crx+ retina | CTCGAGTCTC (3) GCAGCTATCC (3) TAAGGTGGTT
| 11.5 | 0.0115 |
| Adult retinal | CTCGAGTCTC (3)
| 11.1 | 0.0111 |
| ONL | CTCGAGTCTC (3)
| 3.8 | 0.0038 |