Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.333388	Chd4	chromodomain helicase DNA binding protein 4	6	6 58.4 cM	107932
Gene Ontology	ATP binding | ATP dependent helicase activity | chromatin | chromatin assembly/disassembly | chromatin binding | chromatin modification | DNA binding | helicase activity | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent
Human Homolog	CHD4[chromodomain helicase DNA binding protein 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATGAATATT (2) CCCGAACTGG CGTCAGGAGG CTTGGCTGCA TCTTACTGGC (2) TGCAGGAGCT TGGAAATGAA 29.4 0.0294 P8 GC+1d culture CCCGAACTGG GCGGGCGGGC (2) TCTTACTGGC (2) TGCAGGAGCT 20.5 0.0205 P8 GC+SHH+1d culture CCCGAACTGG GCGGGCGGGC (2) TCTTACTGGC (2) TGCAGGAGCT TGGAAATGAA 31.6 0.0316 3T3 fibroblasts CCCGAACTGG GCGGGCGGGC (2) GTGACAGCTA (3) TGCAGGAGCT 42 0.042 E15 cortex AATGAATATT (2) CCCGAACTGG GTGACAGCTA (3) TGCAGGAGCT 49.5 0.0495 P1 cortex AATGAATATT (2) TGCAGGAGCT 13.6 0.0136 Hypothalamus GCGGGCGGGC (2) TGCAGGAGCT 5.4 0.0054 E12.5 retina CCCGAACTGG TCTTACTGGC (2) TGCAGGAGCT 13.2 0.0132 E14.5 retina CCCGAACTGG GCGGGCGGGC (2) TGCAGGAGCT 10.9 0.0109 E16.5 retina CTTGGCTGCA GCGGGCGGGC (2) TGCAGGAGCT TTTATTGATT 32.6 0.0326 E18.5 retina CCCGAACTGG CTTGGCTGCA GCGGGCGGGC (2) TGCAGGAGCT 9 0.009 P0.5 retina TGCAGGAGCT 17.7 0.0177 P2.5 retina CCCGAACTGG CTTGGCTGCA GCGGGCGGGC (2) TCTTACTGGC (2) TGCAGGAGCT TTTATTGATT 17.7 0.0177 P4.5 retina CCCGAACTGG CTTGGCTGCA GCGGGCGGGC (2) GTGACAGCTA (3) TGCAGGAGCT 17.9 0.0179 P6.5 retina CTTGGCTGCA TGCAGGAGCT TGGAAATGAA 11.7 0.0117 P10.5 crx- retina CGTCAGGAGG CTTGGCTGCA GCGGGCGGGC (2) TCTTACTGGC (2) TGCAGGAGCT 27.9 0.0279 P10.5 crx+ retina TCTTACTGGC (2) TGCAGGAGCT TTTATTGATT 9.6 0.0096 Adult retinal TCTTACTGGC (2) TGCAGGAGCT 13 0.013 ONL TCTTACTGGC (2) TGCAGGAGCT 5.7 0.0057