| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGCTTGTTTG (3)
| 1.6 | 0.0016 |
| Cb medulloblastoma | AGCTTGTTTG (3) TCAATTTGAA
| 11.5 | 0.0115 |
| P8 GC+1d culture | AGCTTGTTTG (3) GCCCCCACCC (2) TCAATTTGAA TTGGCAAAGA (4)
| 6.8 | 0.0068 |
| P8 GC+SHH+1d culture | AGCTTGTTTG (3) GATGACTTGG (2) TCAATTTGAA TGCCCATCCC (2)
| 9.5 | 0.0095 |
| 3T3 fibroblasts | AGCTTGTTTG (3) ATCTACCCAC
| 7 | 0.007 |
| Hypothalamus | GCCCCCACCC (2) TCAATTTGAA TTGGCAAAGA (4)
| 7.2 | 0.0072 |
| E12.5 retina | GATGACTTGG (2) TCAATTTGAA
| 5.7 | 0.0057 |
| E14.5 retina | AGCTTGTTTG (3) AGTGTTTATT (3) TCAATTTGAA TGCCCATCCC (2) TTGGCAAAGA (4)
| 9 | 0.009 |
| E16.5 retina | AGCTTGTTTG (3) ATCTACCCAC TGCCCATCCC (2)
| 7.2 | 0.0072 |
| E18.5 retina | TCAATTTGAA
| 3.6 | 0.0036 |
| P0.5 retina | AGTGTTTATT (3) TCAATTTGAA TTGGCAAAGA (4)
| 6 | 0.006 |
| P2.5 retina | TCAATTTGAA
| 5.3 | 0.0053 |
| P4.5 retina | AGCTTGTTTG (3) AGTGTTTATT (3) GCCCCCACCC (2) TCAATTTGAA
| 17.8 | 0.0178 |
| P6.5 retina | AGCTTGTTTG (3) GATGACTTGG (2) TCAATTTGAA
| 11.7 | 0.0117 |
| P10.5 crx- retina | AGCTTGTTTG (3) TGCCCATCCC (2) TTGGCAAAGA (4)
| 11.2 | 0.0112 |
| P10.5 crx+ retina | GATGACTTGG (2) TCAATTTGAA TTGGCAAAGA (4)
| 7.6 | 0.0076 |
| ONL | ATCTACCCAC
| 1.9 | 0.0019 |