Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1022	D4Ucla1	DNA segment, Chr 4, University of California at Los Angeles 1	4	4 78.3 cM	28148
Mm.1022	Cdc42	cell division cycle 42 homolog (S. cerevisiae)	4	4 66.75 cM	12540
Gene Ontology	actin filament organization | filopodium | GTP binding | GTPase activity | GTPase activity | protein binding | Rho protein signal transduction | small GTPase mediated signal transduction
Human Homolog	CDC42[cell division cycle 42 (GTP binding protein, 25kDa)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 245 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC AAAGTGGGTG (5) 8.2 0.0082 P8 Cb GC TGAGACAAGG (4) 6.5 0.0065 P8 Cb GC ATTCTTTATA (4) 4.9 0.0049 P8 Cb GC TATCTGCTTA (2) 4.9 0.0049 P8 Cb GC AAATGAAATA (3) 3.3 0.0033 P8 Cb GC AAGGTGGGTG (2) 3.3 0.0033 P8 Cb GC TTGGTTAAAA (8) 3.3 0.0033 P8 Cb GC ACTTTATTTA (6) 1.6 0.0016 P8 Cb GC GAAAAAAGAA (9) 1.6 0.0016 P8 Cb GC GGGATCAGTC (3) 1.6 0.0016 P8 Cb GC GGGTGGGGGA (14) 1.6 0.0016 P8 Cb GC TACATAAAAT (14) 1.6 0.0016 P8 Cb GC TAGACAAGCC (3) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma GGGTTGGGGA (6) 18.5 0.0185 Cb medulloblastoma TGAGACAAGG (4) 9.2 0.0092 Cb medulloblastoma AAAGTGGGTG (5) 6.9 0.0069 Cb medulloblastoma ATTCTTTATA (4) 6.9 0.0069 Cb medulloblastoma ACTTTATTTA (6) 4.6 0.0046 Cb medulloblastoma AAATGAAATA (3) 2.3 0.0023 Cb medulloblastoma AAGGTGGGTG (2) 2.3 0.0023 Cb medulloblastoma CCTTGGAATT (4) 2.3 0.0023 Cb medulloblastoma GTCCAAGAAC (5) 2.3 0.0023 Cb medulloblastoma TTGGTTAAAA (8) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture ATTCTTTATA (4) 16 0.016 P8 GC+1d culture TATCTGCTTA (2) 5.7 0.0057 P8 GC+1d culture TGAGACAAGG (4) 5.7 0.0057 P8 GC+1d culture AAAGTGGGTG (5) 2.3 0.0023 P8 GC+1d culture AAATGAAATA (3) 2.3 0.0023 P8 GC+1d culture GTCCAAGAAC (5) 2.3 0.0023 P8 GC+1d culture TAAGAAAATG (5) 2.3 0.0023 P8 GC+1d culture TACATAAAAT (14) 2.3 0.0023 P8 GC+1d culture TCTCCTGATA (2) 2.3 0.0023 P8 GC+1d culture AAGGTGGGTG (2) 1.1 0.0011 P8 GC+1d culture ACTTTATTTA (6) 1.1 0.0011 P8 GC+1d culture CCTTGGAATT (4) 1.1 0.0011 P8 GC+1d culture GAAGAAAAAA (18) 1.1 0.0011 P8 GC+1d culture TGGGTAGGTG (3) 1.1 0.0011 P8 GC+1d culture TTGGTTAAAA (8) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture TATCTGCTTA (2) 7 0.007 P8 GC+SHH+1d culture AAAGTGGGTG (5) 3.5 0.0035 P8 GC+SHH+1d culture TACATAAAAT (14) 3.5 0.0035 P8 GC+SHH+1d culture AAATGAAATA (3) 1.2 0.0012 P8 GC+SHH+1d culture AAGGTGGGTG (2) 1.2 0.0012 P8 GC+SHH+1d culture ACTTTATTTA (6) 1.2 0.0012 P8 GC+SHH+1d culture ATTCTTTATA (4) 1.2 0.0012 P8 GC+SHH+1d culture CCTTGGAATT (4) 1.2 0.0012 P8 GC+SHH+1d culture CTTGTATTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GAAGAAAAAA (18) 1.2 0.0012 P8 GC+SHH+1d culture GGGATCAGTC (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGTGGGGGA (14) 1.2 0.0012 P8 GC+SHH+1d culture TCTCCTGATA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGAGACAAGG (4) 1.2 0.0012 P8 GC+SHH+1d culture TGGGTAGGTG (3) 1.2 0.0012 P8 GC+SHH+1d culture TTGGTTAAAA (8) 1.2 0.0012 3T3 fibroblasts TGAGACAAGG (4) 14 0.014 3T3 fibroblasts TGGGTAGGTG (3) 10.5 0.0105 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts ATCAAGCAGA (3) 3.5 0.0035 3T3 fibroblasts TACATAAAAT (14) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex GGGATCAGTC (3) 4.9 0.0049 E15 cortex TACATAAAAT (14) 4.9 0.0049 E15 cortex TATCTGCTTA (2) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex AAAGTGGGTG (5) 9.1 0.0091 P1 cortex ATTCTTTATA (4) 9.1 0.0091 P1 cortex TATCTGCTTA (2) 9.1 0.0091 P1 cortex TCTCCTGATA (2) 9.1 0.0091 P1 cortex AAGGTGGGTG (2) 4.5 0.0045 P1 cortex GGGTGGGGAG (9) 4.5 0.0045 P1 cortex GGGTGGGGGA (14) 4.5 0.0045 P1 cortex TTGGTTAAAA (8) 4.5 0.0045 Hypothalamus GGGTTGGGGA (6) 202.9 0.2029 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus GGGTGGGGGA (14) 9.1 0.0091 Hypothalamus GTCCAAGAAC (5) 9.1 0.0091 Hypothalamus TATCTGCTTA (2) 5.4 0.0054 Hypothalamus TGAGACAAGG (4) 5.4 0.0054 Hypothalamus ACTTTATTTA (6) 3.6 0.0036 Hypothalamus TAGACAAGCC (3) 3.6 0.0036 Hypothalamus TGGGTAGGTG (3) 3.6 0.0036 Hypothalamus AAAGTGGGTG (5) 1.8 0.0018 Hypothalamus AAATGAAATA (3) 1.8 0.0018 Hypothalamus ATCAAGCAGA (3) 1.8 0.0018 Hypothalamus TACATAAAAT (14) 1.8 0.0018 Hypothalamus TCTCCTGATA (2) 1.8 0.0018 Hypothalamus TTGGTTAAAA (8) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina AAAGTGGGTG (5) 7.5 0.0075 E12.5 retina ATTCTTTATA (4) 5.6 0.0056 E12.5 retina TACATAAAAT (14) 3.8 0.0038 E12.5 retina TGAGACAAGG (4) 3.8 0.0038 E12.5 retina AAGGTGGGTG (2) 1.9 0.0019 E12.5 retina ATCAAGCAGA (3) 1.9 0.0019 E12.5 retina GAAGAAAAAA (18) 1.9 0.0019 E12.5 retina GGGATCAGTC (3) 1.9 0.0019 E12.5 retina GGGTGGGGGA (14) 1.9 0.0019 E12.5 retina TCTCCTGATA (2) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina ATTCTTTATA (4) 14.6 0.0146 E14.5 retina TACATAAAAT (14) 7.3 0.0073 E14.5 retina TTGGTTAAAA (8) 5.5 0.0055 E14.5 retina AAAGTGGGTG (5) 3.6 0.0036 E14.5 retina AAATGAAATA (3) 3.6 0.0036 E14.5 retina TGAGACAAGG (4) 3.6 0.0036 E14.5 retina ACTTTATTTA (6) 1.8 0.0018 E14.5 retina GAAAAAAGAA (9) 1.8 0.0018 E14.5 retina GAAGAAAAAA (18) 1.8 0.0018 E14.5 retina GGGTGGGGAG (9) 1.8 0.0018 E14.5 retina GGGTTGGGGA (6) 1.8 0.0018 E14.5 retina GTCCAAGAAC (5) 1.8 0.0018 E14.5 retina TATCTGCTTA (2) 1.8 0.0018 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina ATTCTTTATA (4) 14.5 0.0145 E16.5 retina TGAGACAAGG (4) 5.4 0.0054 E16.5 retina GTCCAAGAAC (5) 3.6 0.0036 E16.5 retina TACATAAAAT (14) 3.6 0.0036 E16.5 retina AAATGAAATA (3) 1.8 0.0018 E16.5 retina AAGGTGGGTG (2) 1.8 0.0018 E16.5 retina ACTTTATTTA (6) 1.8 0.0018 E16.5 retina ATCAAGCAGA (3) 1.8 0.0018 E16.5 retina GGGTTGGGGA (6) 1.8 0.0018 E16.5 retina TAAGAAAATG (5) 1.8 0.0018 E16.5 retina TATCTGCTTA (2) 1.8 0.0018 E16.5 retina TTGGTTAAAA (8) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina GGGTTGGGGA (6) 23.6 0.0236 E18.5 retina TACATAAAAT (14) 12.7 0.0127 E18.5 retina TGAGACAAGG (4) 10.9 0.0109 E18.5 retina ACTTTATTTA (6) 5.5 0.0055 E18.5 retina CTTGTATTGA (2) 3.6 0.0036 E18.5 retina AAAGTGGGTG (5) 1.8 0.0018 E18.5 retina AAATGAAATA (3) 1.8 0.0018 E18.5 retina ATTCTTTATA (4) 1.8 0.0018 E18.5 retina CCTGCAAAAG (4) 1.8 0.0018 E18.5 retina GGGATCAGTC (3) 1.8 0.0018 E18.5 retina GGGTGGGGGA (14) 1.8 0.0018 E18.5 retina TATCTGCTTA (2) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina AAAGTGGGTG (5) 5.9 0.0059 P0.5 retina TATCTGCTTA (2) 5.9 0.0059 P0.5 retina TGAGACAAGG (4) 3.9 0.0039 P0.5 retina ATTCTTTATA (4) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina AAAGTGGGTG (5) 8.8 0.0088 P2.5 retina ATTCTTTATA (4) 7 0.007 P2.5 retina GGGTTGGGGA (6) 7 0.007 P2.5 retina TGAGACAAGG (4) 5.3 0.0053 P2.5 retina GTCCAAGAAC (5) 3.5 0.0035 P2.5 retina TACATAAAAT (14) 3.5 0.0035 P2.5 retina TCTCCTGATA (2) 3.5 0.0035 P2.5 retina ATCAAGCAGA (3) 1.8 0.0018 P2.5 retina CCTGCAAAAG (4) 1.8 0.0018 P2.5 retina GAAGAAAAAA (18) 1.8 0.0018 P2.5 retina GGGTGGGGAG (9) 1.8 0.0018 P2.5 retina TTGGTTAAAA (8) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina TACATAAAAT (14) 7.9 0.0079 P4.5 retina AAAGTGGGTG (5) 4 0.004 P4.5 retina AAATGAAATA (3) 4 0.004 P4.5 retina TCTCCTGATA (2) 4 0.004 P4.5 retina TGAGACAAGG (4) 4 0.004 P4.5 retina ATTCTTTATA (4) 2 0.002 P4.5 retina CCTTGGAATT (4) 2 0.002 P4.5 retina GGGATCAGTC (3) 2 0.002 P4.5 retina GGGTGGGGGA (14) 2 0.002 P4.5 retina GGGTTGGGGA (6) 2 0.002 P4.5 retina TTGGTTAAAA (8) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina AAAGTGGGTG (5) 18.3 0.0183 P6.5 retina TATCTGCTTA (2) 5 0.005 P6.5 retina GGGTGGGGGA (14) 3.3 0.0033 P6.5 retina TTGGTTAAAA (8) 3.3 0.0033 P6.5 retina AAATGAAATA (3) 1.7 0.0017 P6.5 retina ACTTTATTTA (6) 1.7 0.0017 P6.5 retina ATCAAGCAGA (3) 1.7 0.0017 P6.5 retina CCTTGGAATT (4) 1.7 0.0017 P6.5 retina GAAGAAAAAA (18) 1.7 0.0017 P6.5 retina GGGTTGGGGA (6) 1.7 0.0017 P6.5 retina TACATAAAAT (14) 1.7 0.0017 P6.5 retina TGAGACAAGG (4) 1.7 0.0017 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina TATCTGCTTA (2) 11.1 0.0111 P10.5 crx- retina AAAGTGGGTG (5) 9.3 0.0093 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina ATTCTTTATA (4) 7.4 0.0074 P10.5 crx- retina GTCCAAGAAC (5) 7.4 0.0074 P10.5 crx- retina GGGTGGGGGA (14) 5.6 0.0056 P10.5 crx- retina TCTCCTGATA (2) 5.6 0.0056 P10.5 crx- retina TACATAAAAT (14) 3.7 0.0037 P10.5 crx- retina AAATGAAATA (3) 1.9 0.0019 P10.5 crx- retina ACTTTATTTA (6) 1.9 0.0019 P10.5 crx- retina CCTTGGAATT (4) 1.9 0.0019 P10.5 crx- retina TGAGACAAGG (4) 1.9 0.0019 P10.5 crx- retina TTGGTTAAAA (8) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina AAAGTGGGTG (5) 15.4 0.0154 P10.5 crx+ retina TACATAAAAT (14) 5.8 0.0058 P10.5 crx+ retina TATCTGCTTA (2) 5.8 0.0058 P10.5 crx+ retina GAAAAAAGAA (9) 3.8 0.0038 P10.5 crx+ retina GTCCAAGAAC (5) 3.8 0.0038 P10.5 crx+ retina AAATGAAATA (3) 1.9 0.0019 P10.5 crx+ retina AAGGTGGGTG (2) 1.9 0.0019 P10.5 crx+ retina GGGTGGGGGA (14) 1.9 0.0019 P10.5 crx+ retina TGAGACAAGG (4) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal AAAGTGGGTG (5) 9.3 0.0093 Adult retinal GGGTGGGGGA (14) 3.7 0.0037 Adult retinal ATTCTTTATA (4) 1.9 0.0019 Adult retinal CCTGCAAAAG (4) 1.9 0.0019 Adult retinal GGGTTGGGGA (6) 1.9 0.0019 Adult retinal TATCTGCTTA (2) 1.9 0.0019 Adult retinal TCTCCTGATA (2) 1.9 0.0019 ONL GGGTTGGGGA (6) 32.6 0.0326 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL AAATGAAATA (3) 9.6 0.0096 ONL AAAGTGGGTG (5) 5.7 0.0057 ONL TCTCCTGATA (2) 5.7 0.0057 ONL ATTCTTTATA (4) 1.9 0.0019 ONL GAAAAAAGAA (9) 1.9 0.0019 ONL GAAGAAAAAA (18) 1.9 0.0019 ONL TACATAAAAT (14) 1.9 0.0019 ONL TTGGTTAAAA (8) 1.9 0.0019